• using R version 4.3.3 (2024-02-29)
• using platform: aarch64-apple-darwin20 (64-bit)
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
• running under: macOS Ventura 13.4
• using session charset: UTF-8
• checking for file ‘Haplin/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘Haplin’ version ‘7.3.2’
• checking package namespace information ... OK
• checking package dependencies ... NOTE Package suggested but not available for checking: ‘Rmpi’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘Haplin’ can be installed ... [7s/8s] OK See the install log for details.
• used C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
• used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
• used SDK: ‘MacOSX11.3.sdk’
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking startup messages can be suppressed ... [1s/1s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/11s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [3s/4s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [16s/18s] OK   Running ‘testthat.R’ [16s/18s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [57s/61s] OK   ‘A_Haplin_intro_installation.Rmd’ using ‘UTF-8’... [1s/1s] OK   ‘B_Reading_data.Rmd’ using ‘UTF-8’... [2s/2s] OK   ‘C_Running_Haplin.Rmd’ using ‘UTF-8’... [52s/56s] OK   ‘D_Running_Haplin_on_cluster.Rmd’ using ‘UTF-8’... [0s/0s] OK   ‘E_hapRelEff.Rmd’ using ‘UTF-8’... [1s/1s] OK
• checking re-building of vignette outputs ... [75s/87s] OK
• checking PDF version of manual ... [5s/6s] OK
• DONE Status: 1 NOTE
• using check arguments '--no-clean-on-error '