* using log directory ‘/Volumes/Builds/packages/big-sur-arm64/results/4.3/HCD.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: aarch64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.4 * using session charset: UTF-8 * checking for file ‘HCD/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HCD’ version ‘1.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HCD’ can be installed ... [6s/7s] OK See 'https://www.r-project.org/nosvn/R.check/r-oldrel-macos-arm64/HCD-00install.html' for details. * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s/2s] OK * checking whether the package can be loaded with stated dependencies ... [1s/2s] OK * checking whether the package can be unloaded cleanly ... [1s/2s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [2s/2s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [4s/4s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [2s/2s] ERROR Running examples in ‘HCD-Ex.R’ failed The error most likely occurred in: > ### Name: HCD > ### Title: hierarchical community detection with recursive spectral methods > ### Aliases: HCD > ### Keywords: HCD BTSBM > > ### ** Examples > > dt <- BTSBM(n=1600,d=4,a.seq=0.2^seq(0,4),lambda=50) > A <- dt$A.list[[1]] > # you can try various versions of the algorithm as below: the Fix is fastest and ECV is slowest. > system.time(HCD.result <- HCD(A,method="SC",stopping="Fix",D=4)) Begin clustering.... Error in irlba(f, nu = 2, nv = 2) : function 'as_cholmod_sparse' not provided by package 'Matrix' Calls: system.time -> HCD -> break.cl.sp -> irlba Timing stopped at: 0.009 0.001 0.01 Execution halted * checking PDF version of manual ... [4s/4s] OK * DONE Status: 1 ERROR * using check arguments '--no-clean-on-error ' * elapsed time (check, wall clock): 0:53