Check results for 'DivInsight'

using R version 4.3.0 (2023-04-21)
using platform: aarch64-apple-darwin20 (64-bit)
R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0
running under: macOS Ventura 13.4
using session charset: UTF-8
checking for file ‘DivInsight/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘DivInsight’ version ‘0.1.0’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘DivInsight’ can be installed ... [38s/45s] OK See the install log for details.
checking installed package size ... NOTE installed size is 9.6Mb sub-directories of 1Mb or more: data 8.3Mb doc 1.1Mb
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [1s/2s] OK
checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
checking whether the package can be unloaded cleanly ... [1s/1s] OK
checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
checking loading without being on the library search path ... [1s/2s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [3s/4s] OK
checking Rd files ... [0s/0s] OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... [16s/19s] OK
checking LazyData ... OK
checking data for ASCII and uncompressed saves ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [15s/18s] ERROR Running examples in ‘DivInsight-Ex.R’ failed The error most likely occurred in: > ### Name: site_regroup > ### Title: Regroup Sites > ### Aliases: site_regroup > > ### ** Examples > > # regroup the sites with a group radius of 5km instead of 20km > Colombia_Caquetá_dataframe <- subset(Colombia, stateProvince == "Caquetá") > > clusterised_Caquetá <- clusterise_sites(dataframe = Colombia_Caquetá_dataframe, + cluster_min_length = 30, + group_radius = 20000 + ) > > print(clusterised_Caquetá[[2]]) longitude latitude site_group date 1 -75.54658 1.558959 1 2008-06-01 2 -75.81619 1.339552 2 2008-06-01 3 -75.78822 1.289720 2 2016-03-08 4 -75.78894 1.267924 2 2019-02-08 5 -75.65327 1.441539 3 2016-03-09 6 -75.66336 1.456000 3 2016-03-16 7 -75.65286 1.441330 3 2019-01-24 8 -75.65567 1.439890 3 2019-01-25 9 -75.65288 1.385920 3 2019-02-06 10 -75.97152 1.194183 4 2016-03-15 11 -75.61600 1.709897 5 2016-03-22 12 -75.61369 1.716690 5 2016-03-29 13 -75.63117 1.678451 5 2016-03-30 14 -75.63488 1.651888 5 2016-04-13 15 -75.61261 1.717140 5 2018-12-17 16 -75.65950 1.744000 5 2019-01-21 17 -75.59994 1.707670 5 2019-01-23 18 -75.63404 1.657868 5 2019-02-18 19 -75.77772 1.438032 7 2016-05-13 20 -75.76399 1.431014 7 2016-05-19 21 -75.75257 1.403800 7 2018-11-07 22 -75.86772 1.475750 7 2018-11-27 23 -75.74022 1.509550 7 2018-11-28 24 -75.80704 1.469540 7 2018-12-12 25 -75.81220 1.510290 7 2018-12-14 26 -75.88993 1.490180 7 2019-01-23 27 -75.90423 1.688207 8 2017-01-25 28 -75.90526 1.629135 8 2017-01-28 29 -Inf 90.000000 8 2017-01-30 30 -75.01101 1.317384 12 2018-12-04 31 -75.00592 1.321170 12 2019-02-14 > > clusterised_Caquetá_5km_sites <- site_regroup( + + clusterised_object = clusterised_Caquetá, + regroup_radius = 5000 + + ) Error in .pointsToMatrix(x) : longitude < -360 Calls: site_regroup -> distm -> .pointsToMatrix Execution halted
checking for unstated dependencies in vignettes ... OK
checking package vignettes in ‘inst/doc’ ... OK
checking running R code from vignettes ... [1s/1s] NONE ‘Coordinate_References.Rmd’ using ‘UTF-8’... [0s/0s] OK ‘Create_Speccomm.Rmd’ using ‘UTF-8’... [0s/0s] OK ‘Group_Sites.Rmd’ using ‘UTF-8’... [0s/0s] OK ‘Intro_to_DivInsight.Rmd’ using ‘UTF-8’... [0s/0s] OK
checking re-building of vignette outputs ... [80s/99s] OK
checking PDF version of manual ... [3s/4s] OK
DONE Status: 1 ERROR, 1 NOTE
using check arguments '--no-clean-on-error '