Install log for 'DNAtools'

* installing *source* package ‘DNAtools’ ...
** package ‘DNAtools’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 13.0.0 (clang-1300.0.29.30)’
using C++11
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c class_DNTRare.cpp -o class_DNTRare.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c compare-utils.cpp -o compare-utils.o
compare-utils.cpp:107:20: warning: object backing the pointer will be destroyed at the end of the full-expression [-Wdangling-gsl]
  int *pnProf1 = &(Rcpp::as<std::vector<int> >(prof1)[0]); // this should replace INTEGER(prof1)
                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compare-utils.cpp:108:20: warning: object backing the pointer will be destroyed at the end of the full-expression [-Wdangling-gsl]
  int *pnProf2 = &(Rcpp::as<std::vector<int> >(prof2)[0]);
                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2 warnings generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c compare.cpp -o compare.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c compare_threaded.cpp -o compare_threaded.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c number_of_alleles.cpp -o number_of_alleles.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c profile.cpp -o profile.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c rare_prob.cpp -o rare_prob.o
clang++ -arch arm64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o DNAtools.so RcppExports.o class_DNTRare.o compare-utils.o compare.o compare_threaded.o number_of_alleles.o profile.o rare_prob.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.3/DNAtools.Rcheck/00LOCK-DNAtools/00new/DNAtools/libs
** generating debug symbols (dSYM)
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DNAtools)