- using R version 4.3.3 (2024-02-29)
- using platform: aarch64-apple-darwin20 (64-bit)
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.4
- using session charset: UTF-8
- checking for file ‘BeeBDC/DESCRIPTION’ ... OK
- this is package ‘BeeBDC’ version ‘1.2.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘BeeBDC’ can be installed ... [14s/17s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s/3s] OK
- checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
- checking whether the package can be unloaded cleanly ... [3s/3s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
- checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
- checking loading without being on the library search path ... [3s/4s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [11s/12s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [15s/17s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [31s/38s] ERROR
Running ‘testthat.R’ [31s/38s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-formattedCombiner.R:65:1'): (code run outside of `test_that()`) ──
Error in `file(.)`: invalid 'description' argument
Backtrace:
▆
1. ├─BeeBDC::formattedCombiner(...) at test-formattedCombiner.R:65:1
2. │ └─... %>% xml2::read_xml()
3. ├─xml2::read_xml(.)
4. └─base::file(.)
[ FAIL 1 | WARN 4 | SKIP 0 | PASS 244 ]
Error: Test failures
Execution halted
Warning message:
Connection is garbage-collected, use dbDisconnect() to avoid this.
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... [27s/35s] ERROR
Errors in running code in vignettes:
when running code in ‘BeeBDC_main.Rmd’
...
> rm(testChecklist)
> check_space <- BeeBDC::countryOutlieRs(checklist = checklistFile,
+ data = check_space, keepAdjacentCountry = TRUE, pointBuffer = 0.05,
+ .... [TRUNCATED]
When sourcing ‘BeeBDC_main.R’:
Error: object 'checklistFile' not found
Execution halted
‘BeeBDC_main.Rmd’ using ‘UTF-8’... failed
‘basic_workflow.Rmd’ using ‘UTF-8’... [10s/13s] OK
- checking re-building of vignette outputs ... [44s/59s] OK
- checking PDF version of manual ... [5s/6s] OK
- DONE
Status: 2 ERRORs
- using check arguments '--no-clean-on-error '