* installing *source* package 'stan4bart' ...
** this is package 'stan4bart' version '0.0-10'
** package 'stan4bart' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
using C++ compiler: 'g++.exe (GCC) 13.3.0'
using C++17
make[1]: Entering directory '/d/temp/2025_02_15_01_50_01_12291/RtmpYnnafH/R.INSTALL413c7ae2285b/stan4bart/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppEigen/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/dbarts/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -I"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include" -D_REENTRANT -DSTAN_THREADS -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bart_util.cpp -o bart_util.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppEigen/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/dbarts/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -I"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include" -D_REENTRANT -DSTAN_THREADS -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.cpp -o init.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppEigen/include/unsupported/Eigen/NonLinearOptimization:137,
from include/stan/math/rev/functor/solve_powell.hpp:12,
from include/stan/math/rev/functor.hpp:5,
from include/stan/math/rev.hpp:11,
from include/stan/model/gradient.hpp:6,
from include/stan/mcmc/hmc/hamiltonians/base_hamiltonian.hpp:6,
from include/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:5,
from include/stan/mcmc/hmc/nuts/diag_e_nuts.hpp:6,
from include/stan/mcmc/hmc/nuts/adapt_diag_e_nuts.hpp:6,
from interruptable_sampler.hpp:68,
from stan_sampler.hpp:18,
from init.cpp:30:
D:/RCompile/CRANpkg/lib/4.5/RcppEigen/include/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h: In member function 'Eigen::LevenbergMarquardtSpace::Status Eigen::LevenbergMarquardt<FunctorType, Scalar>::minimizeOptimumStorageInit(FVectorType&)':
D:/RCompile/CRANpkg/lib/4.5/RcppEigen/include/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h:409: note: '-Wmisleading-indentation' is disabled from this point onwards, since column-tracking was disabled due to the size of the code/headers
409 | if (n <= 0 || m < n || parameters.ftol < 0. || parameters.xtol < 0. || parameters.gtol < 0. || parameters.maxfev <= 0 || parameters.factor <= 0.)
|
D:/RCompile/CRANpkg/lib/4.5/RcppEigen/include/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h:409: note: adding '-flarge-source-files' will allow for more column-tracking support, at the expense of compilation time and memory
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppEigen/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/dbarts/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c misc_adaptiveRadixTree.c -o misc_adaptiveRadixTree.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppEigen/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/dbarts/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c misc_string.c -o misc_string.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppEigen/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/dbarts/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rc_bounds.c -o rc_bounds.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppEigen/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/dbarts/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rc_util.c -o rc_util.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppEigen/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/dbarts/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -I"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include" -D_REENTRANT -DSTAN_THREADS -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stan_sampler.cpp -o stan_sampler.o
In file included from include/stan/math/rev/functor.hpp:29,
from include/stan/math/rev.hpp:11,
from include/stan/model/gradient.hpp:6,
from include/stan/mcmc/hmc/hamiltonians/base_hamiltonian.hpp:6,
from include/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:5,
from include/stan/mcmc/hmc/nuts/diag_e_nuts.hpp:6,
from include/stan/mcmc/hmc/nuts/adapt_diag_e_nuts.hpp:6,
from interruptable_sampler.hpp:68,
from stan_sampler.hpp:18,
from stan_sampler.cpp:1:
include/stan/math/rev/functor/reduce_sum.hpp: In member function 'void stan::math::internal::reduce_sum_impl<ReduceFunction, typename std::enable_if<stan::is_var<typename std::decay<_Tp2>::type, void>::value, void>::type, ReturnType, Vec, Args ...>::recursive_reducer::join(const stan::math::internal::reduce_sum_impl<ReduceFunction, typename std::enable_if<stan::is_var<typename std::decay<_Tp2>::type, void>::value, void>::type, ReturnType, Vec, Args ...>::recursive_reducer&)':
include/stan/math/rev/functor/reduce_sum.hpp:177: note: '-Wmisleading-indentation' is disabled from this point onwards, since column-tracking was disabled due to the size of the code/headers
177 | } else if (args_adjoints_.size() == 0 && rhs.args_adjoints_.size() != 0) {
|
include/stan/math/rev/functor/reduce_sum.hpp:177: note: adding '-flarge-source-files' will allow for more column-tracking support, at the expense of compilation time and memory
g++ -shared -s -static-libgcc -o stan4bart.dll tmp.def bart_util.o init.o misc_adaptiveRadixTree.o misc_string.o rc_bounds.o rc_util.o stan_sampler.o -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -Wl,-rpath,D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -Wl,--allow-multiple-definition -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_02_15_01_50_01_12291/RtmpYnnafH/R.INSTALL413c7ae2285b/stan4bart/src'
make[1]: Entering directory '/d/temp/2025_02_15_01_50_01_12291/RtmpYnnafH/R.INSTALL413c7ae2285b/stan4bart/src'
make[1]: Leaving directory '/d/temp/2025_02_15_01_50_01_12291/RtmpYnnafH/R.INSTALL413c7ae2285b/stan4bart/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-stan4bart/00new/stan4bart/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'stan4bart' as stan4bart_0.0-10.zip
* DONE (stan4bart)