* installing *source* package 'spAbundance' ...
** package 'spAbundance' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2024_12_22_01_50_00_26287/RtmpSS9YGh/R.INSTALL26182c3b5b32/spAbundance/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c DS.cpp -o DS.o
DS.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
DS.cpp: In function 'SEXPREC* DS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
DS.cpp:774:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
774 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
DS.cpp:204:10: note: 'sigmaSqPSamples_r' was declared here
204 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
DS.cpp:776:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
776 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
DS.cpp:205:10: note: 'alphaStarSamples_r' was declared here
205 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
DS.cpp:768:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
768 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
DS.cpp:213:10: note: 'sigmaSqMuSamples_r' was declared here
213 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
DS.cpp:770:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
770 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
DS.cpp:214:10: note: 'betaStarSamples_r' was declared here
214 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
DS.cpp:868:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
868 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
DS.cpp:236:12: note: 'tmp_0' was declared here
236 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c NMix.cpp -o NMix.o
NMix.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
NMix.cpp: In function 'SEXPREC* NMix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
NMix.cpp:616:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
616 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
NMix.cpp:201:10: note: 'sigmaSqPSamples_r' was declared here
201 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
NMix.cpp:618:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
618 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
NMix.cpp:202:10: note: 'alphaStarSamples_r' was declared here
202 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
NMix.cpp:610:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
610 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
NMix.cpp:210:10: note: 'sigmaSqMuSamples_r' was declared here
210 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
NMix.cpp:612:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
612 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
NMix.cpp:211:10: note: 'betaStarSamples_r' was declared here
211 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
NMix.cpp:708:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
708 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
NMix.cpp:222:12: note: 'tmp_0' was declared here
222 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c abund.cpp -o abund.o
abund.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
abund.cpp: In function 'SEXPREC* abund(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
abund.cpp:411:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
411 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
abund.cpp:169:10: note: 'sigmaSqMuSamples_r' was declared here
169 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
abund.cpp:413:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
413 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
abund.cpp:170:10: note: 'betaStarSamples_r' was declared here
170 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c abundGaussian.cpp -o abundGaussian.o
abundGaussian.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
abundGaussian.cpp: In function 'SEXPREC* abundGaussian(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
abundGaussian.cpp:371:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
371 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
abundGaussian.cpp:164:10: note: 'sigmaSqMuSamples_r' was declared here
164 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
abundGaussian.cpp:373:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
373 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
abundGaussian.cpp:165:10: note: 'betaStarSamples_r' was declared here
165 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c checkAlphaDS.cpp -o checkAlphaDS.o
checkAlphaDS.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c checkMSAlphaDS.cpp -o checkMSAlphaDS.o
checkMSAlphaDS.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c idist.cpp -o idist.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c init.cpp -o init.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c lfMsAbund.cpp -o lfMsAbund.o
lfMsAbund.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
lfMsAbund.cpp: In function 'SEXPREC* lfMsAbund(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
lfMsAbund.cpp:721:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
721 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:220:10: note: 'sigmaSqMuSamples_r' was declared here
220 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:722:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
722 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:221:10: note: 'betaStarSamples_r' was declared here
221 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsAbund.cpp:807:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
807 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:229:10: note: 'kappaSamples_r' was declared here
229 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c lfMsAbundGaussian.cpp -o lfMsAbundGaussian.o
lfMsAbundGaussian.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
lfMsAbundGaussian.cpp: In function 'SEXPREC* lfMsAbundGaussian(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
lfMsAbundGaussian.cpp:680:59: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
680 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsAbundGaussian.cpp:244:10: note: 'sigmaSqMuSamples_r' was declared here
244 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsAbundGaussian.cpp:681:59: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
681 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsAbundGaussian.cpp:245:10: note: 'betaStarSamples_r' was declared here
245 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c lfMsDS.cpp -o lfMsDS.o
lfMsDS.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
lfMsDS.cpp: In function 'SEXPREC* lfMsDS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
lfMsDS.cpp:1153:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1153 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:278:10: note: 'sigmaSqPSamples_r' was declared here
278 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsDS.cpp:1154:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1154 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:279:10: note: 'alphaStarSamples_r' was declared here
279 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsDS.cpp:1157:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1157 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:287:10: note: 'sigmaSqMuSamples_r' was declared here
287 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsDS.cpp:1158:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1158 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:288:10: note: 'betaStarSamples_r' was declared here
288 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsDS.cpp:1260:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1260 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:295:10: note: 'kappaSamples_r' was declared here
295 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
lfMsDS.cpp:1256:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1256 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
lfMsDS.cpp:186:12: note: 'tmp_0' was declared here
186 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c lfMsNMix.cpp -o lfMsNMix.o
lfMsNMix.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
lfMsNMix.cpp: In function 'SEXPREC* lfMsNMix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
lfMsNMix.cpp:1014:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1014 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:271:10: note: 'sigmaSqPSamples_r' was declared here
271 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1015:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1015 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:272:10: note: 'alphaStarSamples_r' was declared here
272 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1018:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1018 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:280:10: note: 'sigmaSqMuSamples_r' was declared here
280 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1019:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1019 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:281:10: note: 'betaStarSamples_r' was declared here
281 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1116:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1116 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:288:10: note: 'kappaSamples_r' was declared here
288 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
lfMsNMix.cpp:1112:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1112 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
lfMsNMix.cpp:179:12: note: 'tmp_0' was declared here
179 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c mkSpCov.cpp -o mkSpCov.o
mkSpCov.cpp:3: warning: "R_NO_REMAP" redefined
3 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c msAbund.cpp -o msAbund.o
msAbund.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
msAbund.cpp: In function 'SEXPREC* msAbund(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
msAbund.cpp:527:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
527 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msAbund.cpp:200:10: note: 'sigmaSqMuSamples_r' was declared here
200 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msAbund.cpp:528:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
528 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msAbund.cpp:201:10: note: 'betaStarSamples_r' was declared here
201 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
msAbund.cpp:611:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
611 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
msAbund.cpp:209:10: note: 'kappaSamples_r' was declared here
209 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c msAbundGaussian.cpp -o msAbundGaussian.o
msAbundGaussian.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
msAbundGaussian.cpp: In function 'SEXPREC* msAbundGaussian(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
msAbundGaussian.cpp:500:59: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
500 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msAbundGaussian.cpp:218:10: note: 'sigmaSqMuSamples_r' was declared here
218 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msAbundGaussian.cpp:501:59: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
501 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msAbundGaussian.cpp:219:10: note: 'betaStarSamples_r' was declared here
219 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c msDS.cpp -o msDS.o
msDS.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
msDS.cpp: In function 'SEXPREC* msDS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
msDS.cpp:967:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
967 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msDS.cpp:259:10: note: 'sigmaSqPSamples_r' was declared here
259 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
msDS.cpp:968:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
968 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msDS.cpp:260:10: note: 'alphaStarSamples_r' was declared here
260 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
msDS.cpp:971:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
971 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msDS.cpp:268:10: note: 'sigmaSqMuSamples_r' was declared here
268 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msDS.cpp:972:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
972 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msDS.cpp:269:10: note: 'betaStarSamples_r' was declared here
269 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
msDS.cpp:1072:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1072 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
msDS.cpp:276:10: note: 'kappaSamples_r' was declared here
276 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
msDS.cpp:1068:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1068 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
msDS.cpp:180:12: note: 'tmp_0' was declared here
180 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c msNMix.cpp -o msNMix.o
msNMix.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
msNMix.cpp: In function 'SEXPREC* msNMix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
msNMix.cpp:840:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
840 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msNMix.cpp:253:10: note: 'sigmaSqPSamples_r' was declared here
253 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
msNMix.cpp:841:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
841 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msNMix.cpp:254:10: note: 'alphaStarSamples_r' was declared here
254 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
msNMix.cpp:844:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
844 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msNMix.cpp:262:10: note: 'sigmaSqMuSamples_r' was declared here
262 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msNMix.cpp:845:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
845 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msNMix.cpp:263:10: note: 'betaStarSamples_r' was declared here
263 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
msNMix.cpp:940:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
940 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
msNMix.cpp:270:10: note: 'kappaSamples_r' was declared here
270 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
msNMix.cpp:936:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
936 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
msNMix.cpp:174:12: note: 'tmp_0' was declared here
174 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c nn.cpp -o nn.o
nn.cpp:11: warning: "R_NO_REMAP" redefined
11 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c rpg.cpp -o rpg.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c sfMsAbundGaussianNNGP.cpp -o sfMsAbundGaussianNNGP.o
sfMsAbundGaussianNNGP.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
sfMsAbundGaussianNNGP.cpp: In function 'SEXPREC* sfMsAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfMsAbundGaussianNNGP.cpp:943:53: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
943 | F77_NAME(dcopy)(&JN, yRep, &inc, &REAL(yRepSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:301:10: note: 'yRepSamples_r' was declared here
301 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:942:51: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
942 | F77_NAME(dcopy)(&JN, mu, &inc, &REAL(muSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:302:10: note: 'muSamples_r' was declared here
302 | SEXP muSamples_r;
| ^~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:944:53: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
944 | F77_NAME(dcopy)(&JN, like, &inc, &REAL(likeSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:303:10: note: 'likeSamples_r' was declared here
303 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:949:59: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
949 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:320:10: note: 'sigmaSqMuSamples_r' was declared here
320 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:950:59: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
950 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:321:10: note: 'betaStarSamples_r' was declared here
321 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c sfMsAbundNNGP.cpp -o sfMsAbundNNGP.o
sfMsAbundNNGP.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
sfMsAbundNNGP.cpp: In function 'SEXPREC* sfMsAbundNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfMsAbundNNGP.cpp:539:21: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
539 | SET_VECTOR_ELT(result_r, 3, yRepSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:269:10: note: 'yRepSamples_r' was declared here
269 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundNNGP.cpp:540:21: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
540 | SET_VECTOR_ELT(result_r, 4, muSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:270:10: note: 'muSamples_r' was declared here
270 | SEXP muSamples_r;
| ^~~~~~~~~~~
sfMsAbundNNGP.cpp:541:21: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
541 | SET_VECTOR_ELT(result_r, 10, likeSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:271:10: note: 'likeSamples_r' was declared here
271 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundNNGP.cpp:549:21: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
549 | SET_VECTOR_ELT(result_r, 11, sigmaSqMuSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:288:10: note: 'sigmaSqMuSamples_r' was declared here
288 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:550:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
550 | SET_VECTOR_ELT(result_r, 12, betaStarSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:289:10: note: 'betaStarSamples_r' was declared here
289 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:558:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
558 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:297:10: note: 'kappaSamples_r' was declared here
297 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c sfMsAbundNNGPPredict.cpp -o sfMsAbundNNGPPredict.o
sfMsAbundNNGPPredict.cpp:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c sfMsDSNNGP.cpp -o sfMsDSNNGP.o
sfMsDSNNGP.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
sfMsDSNNGP.cpp: In function 'SEXPREC* sfMsDSNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfMsDSNNGP.cpp:1429:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1429 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:342:10: note: 'sigmaSqPSamples_r' was declared here
342 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1430:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1430 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:343:10: note: 'alphaStarSamples_r' was declared here
343 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1433:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1433 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:351:10: note: 'sigmaSqMuSamples_r' was declared here
351 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1434:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1434 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:352:10: note: 'betaStarSamples_r' was declared here
352 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1543:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1543 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:359:10: note: 'kappaSamples_r' was declared here
359 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1539:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1539 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
sfMsDSNNGP.cpp:244:12: note: 'tmp_0' was declared here
244 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c sfMsNMixNNGP.cpp -o sfMsNMixNNGP.o
sfMsNMixNNGP.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
sfMsNMixNNGP.cpp: In function 'SEXPREC* sfMsNMixNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfMsNMixNNGP.cpp:1290:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1290 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:336:10: note: 'sigmaSqPSamples_r' was declared here
336 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1291:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1291 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:337:10: note: 'alphaStarSamples_r' was declared here
337 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1294:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1294 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:345:10: note: 'sigmaSqMuSamples_r' was declared here
345 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1295:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1295 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:346:10: note: 'betaStarSamples_r' was declared here
346 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1399:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1399 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:353:10: note: 'kappaSamples_r' was declared here
353 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1395:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1395 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
sfMsNMixNNGP.cpp:238:12: note: 'tmp_0' was declared here
238 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c sfMsNMixNNGPPredict.cpp -o sfMsNMixNNGPPredict.o
sfMsNMixNNGPPredict.cpp:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c spAbundGaussianNNGP.cpp -o spAbundGaussianNNGP.o
spAbundGaussianNNGP.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
spAbundGaussianNNGP.cpp: In function 'SEXPREC* spAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spAbundGaussianNNGP.cpp:663:52: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
663 | F77_NAME(dcopy)(&J, yRep, &inc, &REAL(yRepSamples_r)[sPost*J], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:230:10: note: 'yRepSamples_r' was declared here
230 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:664:60: warning: 'yRepZeroSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
664 | F77_NAME(dcopy)(&JZero, yRepZero, &inc, &REAL(yRepZeroSamples_r)[sPost*JZero], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:231:10: note: 'yRepZeroSamples_r' was declared here
231 | SEXP yRepZeroSamples_r;
| ^~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:665:50: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
665 | F77_NAME(dcopy)(&J, mu, &inc, &REAL(muSamples_r)[sPost*J], &inc);
| ~~~~^~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:232:10: note: 'muSamples_r' was declared here
232 | SEXP muSamples_r;
| ^~~~~~~~~~~
spAbundGaussianNNGP.cpp:667:36: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
667 | &REAL(likeSamples_r)[sPost*J], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:233:10: note: 'likeSamples_r' was declared here
233 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:671:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
671 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:248:10: note: 'sigmaSqMuSamples_r' was declared here
248 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:673:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
673 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:249:10: note: 'betaStarSamples_r' was declared here
249 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c spAbundNNGP.cpp -o spAbundNNGP.o
spAbundNNGP.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
spAbundNNGP.cpp: In function 'SEXPREC* spAbundNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spAbundNNGP.cpp:760:55: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
760 | F77_NAME(dcopy)(&nObs, yRep, &inc, &REAL(yRepSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundNNGP.cpp:223:10: note: 'yRepSamples_r' was declared here
223 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
spAbundNNGP.cpp:759:53: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
759 | F77_NAME(dcopy)(&nObs, mu, &inc, &REAL(muSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~
spAbundNNGP.cpp:224:10: note: 'muSamples_r' was declared here
224 | SEXP muSamples_r;
| ^~~~~~~~~~~
spAbundNNGP.cpp:762:36: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
762 | &REAL(likeSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundNNGP.cpp:225:10: note: 'likeSamples_r' was declared here
225 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
spAbundNNGP.cpp:861:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
861 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:237:10: note: 'kappaSamples_r' was declared here
237 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
spAbundNNGP.cpp:771:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
771 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:243:10: note: 'sigmaSqMuSamples_r' was declared here
243 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:773:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
773 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:244:10: note: 'betaStarSamples_r' was declared here
244 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c spDSNNGP.cpp -o spDSNNGP.o
spDSNNGP.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
spDSNNGP.cpp: In function 'SEXPREC* spDSNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spDSNNGP.cpp:1235:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1235 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:261:10: note: 'kappaSamples_r' was declared here
261 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
spDSNNGP.cpp:1128:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1128 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:273:10: note: 'sigmaSqPSamples_r' was declared here
273 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1130:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1130 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:274:10: note: 'alphaStarSamples_r' was declared here
274 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1122:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1122 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:282:10: note: 'sigmaSqMuSamples_r' was declared here
282 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1124:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1124 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:283:10: note: 'betaStarSamples_r' was declared here
283 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1231:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1231 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
spDSNNGP.cpp:305:12: note: 'tmp_0' was declared here
305 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c spNMixNNGP.cpp -o spNMixNNGP.o
spNMixNNGP.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
spNMixNNGP.cpp: In function 'SEXPREC* spNMixNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spNMixNNGP.cpp:1076:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1076 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:259:10: note: 'kappaSamples_r' was declared here
259 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
spNMixNNGP.cpp:976:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
976 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:271:10: note: 'sigmaSqPSamples_r' was declared here
271 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:978:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
978 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:272:10: note: 'alphaStarSamples_r' was declared here
272 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:970:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
970 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:280:10: note: 'sigmaSqMuSamples_r' was declared here
280 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:972:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
972 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:281:10: note: 'betaStarSamples_r' was declared here
281 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:1072:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1072 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
spNMixNNGP.cpp:292:12: note: 'tmp_0' was declared here
292 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c spNMixNNGPPredict.cpp -o spNMixNNGPPredict.o
spNMixNNGPPredict.cpp:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c svcAbundGaussianNNGP.cpp -o svcAbundGaussianNNGP.o
svcAbundGaussianNNGP.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
svcAbundGaussianNNGP.cpp: In function 'SEXPREC* svcAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcAbundGaussianNNGP.cpp:712:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
712 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcAbundGaussianNNGP.cpp:244:10: note: 'sigmaSqMuSamples_r' was declared here
244 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcAbundGaussianNNGP.cpp:714:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
714 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcAbundGaussianNNGP.cpp:245:10: note: 'betaStarSamples_r' was declared here
245 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
svcAbundGaussianNNGP.cpp:581:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
581 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet)
| ^~~
svcAbundGaussianNNGP.cpp:331:12: note: 'logDet' was declared here
331 | double logDet;
| ^~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c svcAbundGaussianNNGPPredict.cpp -o svcAbundGaussianNNGPPredict.o
svcAbundGaussianNNGPPredict.cpp:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c svcAbundNNGP.cpp -o svcAbundNNGP.o
svcAbundNNGP.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
svcAbundNNGP.cpp: In function 'SEXPREC* svcAbundNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcAbundNNGP.cpp:796:55: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
796 | F77_NAME(dcopy)(&nObs, yRep, &inc, &REAL(yRepSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~~~
svcAbundNNGP.cpp:226:10: note: 'yRepSamples_r' was declared here
226 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
svcAbundNNGP.cpp:795:53: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
795 | F77_NAME(dcopy)(&nObs, mu, &inc, &REAL(muSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~
svcAbundNNGP.cpp:227:10: note: 'muSamples_r' was declared here
227 | SEXP muSamples_r;
| ^~~~~~~~~~~
svcAbundNNGP.cpp:798:36: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
798 | &REAL(likeSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~~~
svcAbundNNGP.cpp:228:10: note: 'likeSamples_r' was declared here
228 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
svcAbundNNGP.cpp:896:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
896 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:240:10: note: 'kappaSamples_r' was declared here
240 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
svcAbundNNGP.cpp:807:36: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
807 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:246:10: note: 'sigmaSqMuSamples_r' was declared here
246 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:809:36: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
809 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:247:10: note: 'betaStarSamples_r' was declared here
247 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c svcAbundNNGPPredict.cpp -o svcAbundNNGPPredict.o
svcAbundNNGPPredict.cpp:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c svcMsAbundGaussianNNGP.cpp -o svcMsAbundGaussianNNGP.o
svcMsAbundGaussianNNGP.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
svcMsAbundGaussianNNGP.cpp: In function 'SEXPREC* svcMsAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcMsAbundGaussianNNGP.cpp:1031:59: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1031 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcMsAbundGaussianNNGP.cpp:321:10: note: 'sigmaSqMuSamples_r' was declared here
321 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcMsAbundGaussianNNGP.cpp:1032:59: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1032 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcMsAbundGaussianNNGP.cpp:322:10: note: 'betaStarSamples_r' was declared here
322 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c svcMsAbundGaussianNNGPPredict.cpp -o svcMsAbundGaussianNNGPPredict.o
svcMsAbundGaussianNNGPPredict.cpp:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c util.cpp -o util.o
util.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c waicAbund.cpp -o waicAbund.o
waicAbund.cpp:10: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -shared -s -static-libgcc -o spAbundance.dll tmp.def DS.o NMix.o abund.o abundGaussian.o checkAlphaDS.o checkMSAlphaDS.o idist.o init.o lfMsAbund.o lfMsAbundGaussian.o lfMsDS.o lfMsNMix.o mkSpCov.o msAbund.o msAbundGaussian.o msDS.o msNMix.o nn.o rpg.o sfMsAbundGaussianNNGP.o sfMsAbundNNGP.o sfMsAbundNNGPPredict.o sfMsDSNNGP.o sfMsNMixNNGP.o sfMsNMixNNGPPredict.o spAbundGaussianNNGP.o spAbundNNGP.o spDSNNGP.o spNMixNNGP.o spNMixNNGPPredict.o svcAbundGaussianNNGP.o svcAbundGaussianNNGPPredict.o svcAbundNNGP.o svcAbundNNGPPredict.o svcMsAbundGaussianNNGP.o svcMsAbundGaussianNNGPPredict.o util.o waicAbund.o -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -fopenmp -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_12_22_01_50_00_26287/RtmpSS9YGh/R.INSTALL26182c3b5b32/spAbundance/src'
make[1]: Entering directory '/d/temp/2024_12_22_01_50_00_26287/RtmpSS9YGh/R.INSTALL26182c3b5b32/spAbundance/src'
make[1]: Leaving directory '/d/temp/2024_12_22_01_50_00_26287/RtmpSS9YGh/R.INSTALL26182c3b5b32/spAbundance/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-spAbundance/00new/spAbundance/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'spAbundance' as spAbundance_0.2.1.zip
* DONE (spAbundance)