Install log for 'rubias'

* installing *source* package 'rubias' ...
** package 'rubias' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2024_12_18_01_50_01_11818/RtmpqgwPbz/R.INSTALL87845d2d4f02/rubias/src'
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"   -DRCPP_PARALLEL_USE_TBB=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"   -DRCPP_PARALLEL_USE_TBB=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c rcpp_close_matchers.cpp -o rcpp_close_matchers.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"   -DRCPP_PARALLEL_USE_TBB=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c rcpp_fullBayes_mcmc.cpp -o rcpp_fullBayes_mcmc.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"   -DRCPP_PARALLEL_USE_TBB=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c rcpp_gprobs.cpp -o rcpp_gprobs.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"   -DRCPP_PARALLEL_USE_TBB=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c rcpp_indiv_specific_logl_means_and_vars.cpp -o rcpp_indiv_specific_logl_means_and_vars.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"   -DRCPP_PARALLEL_USE_TBB=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c rcpp_per_locus_logls.cpp -o rcpp_per_locus_logls.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"   -DRCPP_PARALLEL_USE_TBB=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c rcpp_sampling.cpp -o rcpp_sampling.o
rcpp_sampling.cpp: In function 'Rcpp::IntegerVector samp_from_mat(Rcpp::NumericMatrix)':
rcpp_sampling.cpp:38:12: warning: 'res' may be used uninitialized [-Wmaybe-uninitialized]
   38 |     out[c] = res;
rcpp_sampling.cpp:21:12: note: 'res' was declared here
   21 |   int r,c, res;
      |            ^~~
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"   -DRCPP_PARALLEL_USE_TBB=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c rcpp_simulation.cpp -o rcpp_simulation.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"   -DRCPP_PARALLEL_USE_TBB=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c simple_pi_em.cpp -o simple_pi_em.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"   -DRCPP_PARALLEL_USE_TBB=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c simple_pi_mcmc.cpp -o simple_pi_mcmc.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"   -DRCPP_PARALLEL_USE_TBB=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c utilities.cpp -o utilities.o
g++ -std=gnu++17 -shared -s -static-libgcc -o rubias.dll tmp.def RcppExports.o rcpp_close_matchers.o rcpp_fullBayes_mcmc.o rcpp_gprobs.o rcpp_indiv_specific_logl_means_and_vars.o rcpp_per_locus_logls.o rcpp_sampling.o rcpp_simulation.o simple_pi_em.o simple_pi_mcmc.o utilities.o -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_12_18_01_50_01_11818/RtmpqgwPbz/R.INSTALL87845d2d4f02/rubias/src'
make[1]: Entering directory '/d/temp/2024_12_18_01_50_01_11818/RtmpqgwPbz/R.INSTALL87845d2d4f02/rubias/src'
make[1]: Leaving directory '/d/temp/2024_12_18_01_50_01_11818/RtmpqgwPbz/R.INSTALL87845d2d4f02/rubias/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-rubias/00new/rubias/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'rubias' as rubias_0.3.4.zip
* DONE (rubias)