* using log directory 'd:/Rcompile/CRANpkg/local/4.5/rmzqc.Rcheck'
* using R Under development (unstable) (2025-02-14 r87718 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'rmzqc/DESCRIPTION' ... OK
* this is package 'rmzqc' version '0.5.4'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rmzqc' can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-windows-x86_64/rmzqc-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s] OK
* checking loading without being on the library search path ... [1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [4s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [6s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [14s] ERROR
  Running 'testthat.R' [13s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(rmzqc)
  > 
  > test_check("rmzqc")
  Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
  trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
  Content type 'application/json; charset=utf-8' length 7324 bytes
  ==================================================
  downloaded 7324 bytes
  
  Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' ...
  trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo'
  Content type 'application/octet-stream' length 1008314 bytes (984 KB)
  ==================================================
  downloaded 984 KB
  
  Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
  trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
  Content type 'application/json; charset=utf-8' length 7324 bytes
  ==================================================
  downloaded 7324 bytes
  
  Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' ...
  trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo'
  Content type 'application/octet-stream' length 1008314 bytes (984 KB)
  ==================================================
  downloaded 984 KB
  
  Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ...
  trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
  Error in download.file(custom_uri, tmp_filename) : 
    cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
  Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ...
  trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
  Error in download.file(custom_uri, tmp_filename) : 
    cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
  Error in getCVDictionary(source = "custom", custom_uri = "https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo",  : 
    Download failed.
  trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
  Content type 'application/json; charset=utf-8' length 7324 bytes
  ==================================================
  downloaded 7324 bytes
  
  Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
  Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
  Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
  Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
  Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
  [ FAIL 2 | WARN 14 | SKIP 0 | PASS 87 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_conversion.R:17:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ──
  `toQCMetric(id = "MS:4000059", value = 13405)` produced messages.
  ── Failure ('test_conversion.R:18:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ──
  `toQCMetric(id = "MS:4000059", value = "13405")` produced messages.
  
  [ FAIL 2 | WARN 14 | SKIP 0 | PASS 87 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [23s] OK
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... [6s] OK
* DONE
Status: 1 ERROR