- using R Under development (unstable) (2025-02-14 r87718 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'reslr/DESCRIPTION' ... OK
- this is package 'reslr' version '0.1.1'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'reslr' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s] OK
- checking whether the package can be unloaded cleanly ... [0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s] OK
- checking loading without being on the library search path ... [0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [9s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [2s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [358s] ERROR
Running 'testthat.R' [358s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(reslr)
> library(vdiffr)
>
> co <- function(expr) capture.output(expr, file = "NUL")
>
> # testthat::test_check("reslr")
> test_check("reslr")
module glm loaded
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 52
Unobserved stochastic nodes: 15
Total graph size: 915
Initializing model
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 52
Unobserved stochastic nodes: 70
Total graph size: 3726
Initializing model
No convergence issues detected.
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 52
Unobserved stochastic nodes: 15
Total graph size: 915
Initializing model
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 52
Unobserved stochastic nodes: 70
Total graph size: 3726
Initializing model
No convergence issues detected.
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 208
Unobserved stochastic nodes: 107
Total graph size: 841
Initializing model
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 208
Unobserved stochastic nodes: 109
Total graph size: 1273
Initializing model
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 208
Unobserved stochastic nodes: 111
Total graph size: 1924
Initializing model
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 208
Unobserved stochastic nodes: 110
Total graph size: 21651
Initializing model
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 104
Unobserved stochastic nodes: 15
Total graph size: 1799
Initializing model
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 104
Unobserved stochastic nodes: 18
Total graph size: 3764
Initializing model
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 169
Unobserved stochastic nodes: 90
Total graph size: 15488
Initializing model
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 169
Unobserved stochastic nodes: 95
Total graph size: 32273
Initializing model
Adding missing grouping variables: `SiteName`
Adding missing grouping variables: `SiteName`
Adding missing grouping variables: `SiteName`
Adding missing grouping variables: `SiteName`
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 337
Unobserved stochastic nodes: 49
Total graph size: 12944
Initializing model
Adding missing grouping variables: `SiteName`
Adding missing grouping variables: `SiteName`
Adding missing grouping variables: `SiteName`
Adding missing grouping variables: `SiteName`
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 337
Unobserved stochastic nodes: 258
Total graph size: 166541
Initializing model
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 208
Unobserved stochastic nodes: 107
Total graph size: 1003
Initializing model
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 208
Unobserved stochastic nodes: 109
Total graph size: 1651
Initializing model
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 208
Unobserved stochastic nodes: 110
Total graph size: 390147
Initializing model
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 104
Unobserved stochastic nodes: 15
Total graph size: 1799
Initializing model
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 104
Unobserved stochastic nodes: 72
Total graph size: 5330
Initializing model
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 169
Unobserved stochastic nodes: 90
Total graph size: 15488
Initializing model
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 169
Unobserved stochastic nodes: 197
Total graph size: 50531
Initializing model
[ FAIL 3 | WARN 7 | SKIP 3 | PASS 64 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• On CRAN (3): 'test-test_plot.reslr_input.R:16:3',
'test-test_plot.reslr_input.R:34:3', 'test-test_plot.reslr_input.R:51:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-reslr_prints.R:111:1'): (code run outside of `test_that()`) ────
Error in `utils::download.file(url, destfile = temp_file, quiet = TRUE)`: download from 'https://psmsl.org/data/obtaining/rlr.annual.data/rlr_annual.zip' failed
Backtrace:
▆
1. └─reslr::reslr_load(...) at test-reslr_prints.R:111:1
2. └─reslr:::clean_tidal_gauge_data(...)
3. └─utils::download.file(url, destfile = temp_file, quiet = TRUE)
── Error ('test-test_plot.reslr_input.R:56:1'): (code run outside of `test_that()`) ──
Error in `utils::download.file(url, destfile = temp_file, quiet = TRUE)`: download from 'https://psmsl.org/data/obtaining/rlr.annual.data/rlr_annual.zip' failed
Backtrace:
▆
1. └─reslr::reslr_load(...) at test-test_plot.reslr_input.R:56:1
2. └─reslr:::clean_tidal_gauge_data(...)
3. └─utils::download.file(url, destfile = temp_file, quiet = TRUE)
── Error ('test-test_reslr_load.R:76:3'): Simplest example with list of tide gauges ──
Error in `utils::download.file(url, destfile = temp_file, quiet = TRUE)`: download from 'https://psmsl.org/data/obtaining/rlr.annual.data/rlr_annual.zip' failed
Backtrace:
▆
1. └─reslr::reslr_load(...) at test-test_reslr_load.R:76:3
2. └─reslr:::clean_tidal_gauge_data(...)
3. └─utils::download.file(url, destfile = temp_file, quiet = TRUE)
[ FAIL 3 | WARN 7 | SKIP 3 | PASS 64 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [218s] ERROR
Error(s) in re-building vignettes:
--- re-building 'advanced_reslr.Rmd' using rmarkdown
--- finished re-building 'advanced_reslr.Rmd'
--- re-building 'quick_start.Rmd' using rmarkdown
--- finished re-building 'quick_start.Rmd'
--- re-building 'reslr.Rmd' using rmarkdown
Quitting from lines 842-852 [loadnigam] (reslr.Rmd)
Error: processing vignette 'reslr.Rmd' failed with diagnostics:
download from 'https://psmsl.org/data/obtaining/rlr.annual.data/rlr_annual.zip' failed
--- failed re-building 'reslr.Rmd'
SUMMARY: processing the following file failed:
'reslr.Rmd'
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [21s] OK
- checking HTML version of manual ... [2s] OK
- DONE
Status: 2 ERRORs