• using R version 4.5.0 beta (2025-03-27 r88067 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 14.2.0     GNU Fortran (GCC) 14.2.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'rbiom/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'rbiom' version '2.1.2'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'rbiom' can be installed ... OK See the install log for details.
• used C compiler: 'gcc.exe (GCC) 14.2.0'
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s] OK
• checking whether the package can be loaded with stated dependencies ... [3s] OK
• checking whether the package can be unloaded cleanly ... [3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s] OK
• checking whether the namespace can be unloaded cleanly ... [4s] OK
• checking loading without being on the library search path ... [2s] OK
• checking whether startup messages can be suppressed ... [4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [25s] OK
• checking Rd files ... [3s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... [4s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compiled code ... OK
• checking examples ... [71s] OK
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [22s] ERROR   Running 'testthat.r' [22s] Running the tests in 'tests/testthat.r' failed. Complete output:   > library(testthat)   > library(rbiom)   >   > test_check("rbiom")   [ FAIL 1 | WARN 0 | SKIP 34 | PASS 191 ]      ══ Skipped tests (34) ══════════════════════════════════════════════════════════   • On CRAN (34): 'test-bdiv_heatmap.r:5:3', 'test-bdiv_ord_plot.r:6:3',     'test-biom_merge.r:11:3', 'test-biom_ply.r:9:3', 'test-biom_ply.r:48:3',     'test-boxplot.r:10:3', 'test-boxplot_build.r:3:3', 'test-cache.r:3:3',     'test-convert.r:5:3', 'test-convert.r:24:3', 'test-convert.r:40:3',     'test-corrplot.r:11:3', 'test-distmat_ord_table.r:6:3',     'test-import_table.r:13:3', 'test-plot_heatmap.r:15:3',     'test-plot_palettes.r:6:3', 'test-provenance.r:3:3', 'test-rarefy.r:3:3',     'test-rbiom-deprecated.r:3:3', 'test-rbiom_objects.r:24:3',     'test-read_biom.r:3:3', 'test-read_fasta.r:3:3', 'test-read_tree.r:7:3',     'test-s3_methods.r:3:3', 'test-stats_emmeans.r:8:3',     'test-stats_wilcox.r:3:3', 'test-taxa_heatmap.r:5:3', 'test-taxa_map.r:3:3',     'test-taxa_stacked.r:5:3', 'test-taxa_table.r:3:3', 'test-utils.r:3:3',     'test-validate.r:3:3', 'test-write_biom.r:15:3', 'test-write_xlsx.r:3:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-boxplot.r:7:3'): boxplot ─────────────────────────────────────   `taxa_boxplot(rare5)` produced warnings.      [ FAIL 1 | WARN 0 | SKIP 34 | PASS 191 ]   Error: Test failures   Execution halted
• checking PDF version of manual ... [27s] OK
• checking HTML version of manual ... [18s] OK
• DONE

Status: 1 ERROR