* using log directory 'd:/Rcompile/CRANpkg/local/4.5/protein8k.Rcheck'
* using R Under development (unstable) (2025-02-14 r87718 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'protein8k/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'protein8k' version '0.0.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'protein8k' can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-windows-x86_64/protein8k-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s] OK
* checking whether the package can be unloaded cleanly ... [0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s] OK
* checking loading without being on the library search path ... [0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [3s] OK
* checking Rd files ... [1s] NOTE
checkRd: (-1) Protein-class.Rd:10-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Protein-class.Rd:11-15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Protein-class.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Protein-class.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Protein-class.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Protein-class.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Protein-class.Rd:18-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Protein-class.Rd:19: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) Protein-class.Rd:20: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) Protein-class.Rd:21: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) Protein-class.Rd:23: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) Protein-class.Rd:25: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) Protein-class.Rd:27: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) Protein-class.Rd:28: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) Protein-class.Rd:29: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) Protein-class.Rd:31: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) Protein-class.Rd:33: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) Protein-class.Rd:34: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:9: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:10: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:11: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:13: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:15: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:17: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:18: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:19: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:21: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:23: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:24: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:10-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:11-15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:18-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:19: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:20: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:21: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:23: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:25: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:27: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:28: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:29: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:31: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:33: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:34: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:9-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.pdb.Rd:10-14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.pdb.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.pdb.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.pdb.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.pdb.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.pdb.Rd:17-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.pdb.Rd:18: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:19: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:20: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:22: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:24: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:26: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:27: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:28: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:30: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:32: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:33: Lost braces in \enumerate; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [47s] OK
* checking PDF version of manual ... [20s] OK
* checking HTML version of manual ... [2s] OK
* DONE
Status: 1 NOTE