* using log directory 'd:/Rcompile/CRANpkg/local/4.5/promor.Rcheck' * using R Under development (unstable) (2025-02-14 r87718 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'promor/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'promor' version '0.2.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'promor' can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-devel-windows-x86_64/promor-00install.html' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [5s] OK * checking whether the package can be loaded with stated dependencies ... [5s] OK * checking whether the package can be unloaded cleanly ... [5s] OK * checking whether the namespace can be loaded with stated dependencies ... [5s] OK * checking whether the namespace can be unloaded cleanly ... [5s] OK * checking loading without being on the library search path ... [5s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [13s] OK * checking Rd files ... [1s] NOTE checkRd: (-1) impute_plot.Rd:32: Lost braces; missing escapes or markup? 32 | \item{global}{Logical. If \code{TRUE} ({default}), a global density plot is | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [89s] ERROR Running examples in 'promor-Ex.R' failed The error most likely occurred in: > ### Name: onegroup_only > ### Title: Proteins that are only expressed in a given group > ### Aliases: onegroup_only > > ### ** Examples > > # Generate a raw_df object with default settings. No technical replicates. > raw_df <- create_df( + prot_groups = "https://raw.githubusercontent.com/caranathunge/promor_example_data/main/pg1.txt", + exp_design = "https://raw.githubusercontent.com/caranathunge/promor_example_data/main/ed1.txt" + ) Warning in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, : URL 'https://raw.githubusercontent.com/caranathunge/promor_example_data/main/pg1.txt': Timeout of 60 seconds was reached Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, : cannot read from connection Calls: create_df -> read.csv -> read.table -> scan Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... [11s] OK Running 'testthat.R' [11s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [2s] OK * checking PDF version of manual ... [28s] OK * checking HTML version of manual ... [6s] OK * DONE Status: 1 ERROR, 1 NOTE