• using R Under development (unstable) (2025-02-14 r87718 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 13.3.0     GNU Fortran (GCC) 13.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'promor/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'promor' version '0.2.1'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'promor' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [5s] OK
• checking whether the package can be loaded with stated dependencies ... [5s] OK
• checking whether the package can be unloaded cleanly ... [5s] OK
• checking whether the namespace can be loaded with stated dependencies ... [5s] OK
• checking whether the namespace can be unloaded cleanly ... [5s] OK
• checking loading without being on the library search path ... [5s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [13s] OK
• checking Rd files ... [1s] NOTE checkRd: (-1) impute_plot.Rd:32: Lost braces; missing escapes or markup?     32 | \item{global}{Logical. If \code{TRUE} ({default}), a global density plot is        | ^
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... [1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [89s] ERROR Running examples in 'promor-Ex.R' failed The error most likely occurred in: > ### Name: onegroup_only > ### Title: Proteins that are only expressed in a given group > ### Aliases: onegroup_only > > ### ** Examples > > # Generate a raw_df object with default settings. No technical replicates. > raw_df <- create_df( + prot_groups = "https://raw.githubusercontent.com/caranathunge/promor_example_data/main/pg1.txt", + exp_design = "https://raw.githubusercontent.com/caranathunge/promor_example_data/main/ed1.txt" + ) Warning in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, :   URL 'https://raw.githubusercontent.com/caranathunge/promor_example_data/main/pg1.txt': Timeout of 60 seconds was reached Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, :   cannot read from connection Calls: create_df -> read.csv -> read.table -> scan Execution halted
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [11s] OK   Running 'testthat.R' [11s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s] OK
• checking PDF version of manual ... [28s] OK
• checking HTML version of manual ... [6s] OK
• DONE

Status: 1 ERROR, 1 NOTE