* using log directory 'd:/Rcompile/CRANpkg/local/4.5/portalr.Rcheck' * using R Under development (unstable) (2025-02-14 r87718 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'portalr/DESCRIPTION' ... OK * this is package 'portalr' version '0.4.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'portalr' can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-devel-windows-x86_64/portalr-00install.html' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s] OK * checking whether the package can be loaded with stated dependencies ... [1s] OK * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s] OK * checking whether the namespace can be unloaded cleanly ... [1s] OK * checking loading without being on the library search path ... [1s] OK * checking whether startup messages can be suppressed ... [1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [6s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [1s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [461s] ERROR Running 'testthat.R' [461s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(portalr) > > test_check("portalr") Downloading version `5.125.0` of the data... Downloading version `5.125.0` of the data... Downloading version `5.125.0` of the data... Downloading version `5.125.0` of the data... Downloading version `5.125.0` of the data... [ FAIL 1 | WARN 5 | SKIP 43 | PASS 81 ] â•â• Skipped tests (43) â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â• • On CRAN (43): 'test-01-data-retrieval.R:5:5', 'test-01-data-retrieval.R:41:5', 'test-01-data-retrieval.R:48:5', 'test-01-data-retrieval.R:63:5', 'test-01-data-retrieval.R:78:5', 'test-01-data-retrieval.R:99:5', 'test-03-summarize-rodents.R:6:3', 'test-03-summarize-rodents.R:32:3', 'test-03-summarize-rodents.R:38:3', 'test-03-summarize-rodents.R:60:3', 'test-03-summarize-rodents.R:85:3', 'test-03-summarize-rodents.R:110:3', 'test-03-summarize-rodents.R:129:3', 'test-03-summarize-rodents.R:195:3', 'test-99-regression.R:8:3', 'test-99-regression.R:18:3', 'test-99-regression.R:26:3', 'test-99-regression.R:44:3', 'test-99-regression.R:68:3', 'test-99-regression.R:78:3', 'test-99-regression.R:87:3', 'test-99-regression.R:100:3', 'test-99-regression.R:109:3', 'test-99-regression.R:118:3', 'test-99-regression.R:130:3', 'test-99-regression.R:141:3', 'test-99-regression.R:153:3', 'test-99-regression.R:162:3', 'test-99-regression.R:171:3', 'test-99-regression.R:181:3', 'test-99-regression.R:195:3', 'test-99-regression.R:207:3', 'test-99-regression.R:215:3', 'test-99-regression.R:227:3', 'test-99-regression.R:235:3', 'test-99-regression.R:247:3', 'test-99-regression.R:255:3', 'test-99-regression.R:267:3', 'test-99-regression.R:280:3', 'test-99-regression.R:290:3', 'test-99-regression.R:300:3', 'test-99-regression.R:318:3', 'test-99-regression.R:330:3' â•â• Failed tests â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â• ── Error ('test-02-data-processing.R:8:1'): (code run outside of `test_that()`) ── Error in `UseMethod("rename")`: no applicable method for 'rename' applied to an object of class "c('simpleWarning', 'warning', 'condition')" Backtrace: â–† 1. └─portalr::load_rodent_data(portal_data_path) at test-02-data-processing.R:8:1 2. └─dplyr::rename(species_table, species = "speciescode") [ FAIL 1 | WARN 5 | SKIP 43 | PASS 81 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [5s] OK * checking PDF version of manual ... [22s] OK * checking HTML version of manual ... [5s] OK * DONE Status: 1 ERROR