* installing *source* package 'phylocomr' ...
** package 'phylocomr' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2024_11_18_01_50_00_1577/RtmpyMlVhm/R.INSTALL2fb701ba364ac/phylocomr/src'
rm -Rf phylocomr.dll nothing.o register.o libphylocom/io.o libphylocom/new2fy.o libphylocom/traits.o libphylocom/comstruct.o libphylocom/nrutil.o libphylocom/fy2new.o libphylocom/bladj.o libphylocom/comnode.o libphylocom/prune.o libphylocom/comtrait.o libphylocom/stats.o libphylocom/combase.o libphylocom/libphylocom.a phylocom ecovolve phylomatic
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/io.c -o libphylocom/io.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/new2fy.c -o libphylocom/new2fy.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/traits.c -o libphylocom/traits.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/comstruct.c -o libphylocom/comstruct.o
libphylocom/comstruct.c: In function 'NodeSig':
libphylocom/comstruct.c:1241:34: warning: '*test_r[<unknown>]' may be used uninitialized [-Wmaybe-uninitialized]
1241 | (int) test_r[(int) ((float) RUNS * 0.5)], ordHI,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
libphylocom/comstruct.c:1255:34: warning: '*test_r[<unknown>]' may be used uninitialized [-Wmaybe-uninitialized]
1255 | (int) test_r[(int) ((float) RUNS * 0.5)], ordHI,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
libphylocom/comstruct.c:1262:32: warning: '*test_r[<unknown>]' may be used uninitialized [-Wmaybe-uninitialized]
1262 | (int) test_r[(int) ((float) RUNS * 0.5)], ordHI,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/nrutil.c -o libphylocom/nrutil.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/fy2new.c -o libphylocom/fy2new.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/bladj.c -o libphylocom/bladj.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/comnode.c -o libphylocom/comnode.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/prune.c -o libphylocom/prune.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/comtrait.c -o libphylocom/comtrait.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/stats.c -o libphylocom/stats.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/combase.c -o libphylocom/combase.o
mkdir -p ../inst/bin/x64
ar rcs libphylocom/libphylocom.a libphylocom/io.o libphylocom/new2fy.o libphylocom/traits.o libphylocom/comstruct.o libphylocom/nrutil.o libphylocom/fy2new.o libphylocom/bladj.o libphylocom/comnode.o libphylocom/prune.o libphylocom/comtrait.o libphylocom/stats.o libphylocom/combase.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/main.c -o libphylocom/main.o
gcc -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -o phylocom libphylocom/main.o -Llibphylocom -lphylocom -lm
cp -f phylocom ../inst/bin/x64
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/ecomain.c -o libphylocom/ecomain.o
gcc -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -o ecovolve libphylocom/ecomain.o -Llibphylocom -lphylocom -lm
cp -f ecovolve ../inst/bin/x64
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/phylomatic.c -o libphylocom/phylomatic.o
gcc -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -o phylomatic libphylocom/phylomatic.o -Llibphylocom -lphylocom -lm
cp -f phylomatic ../inst/bin/x64
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nothing.c -o nothing.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c register.c -o register.o
gcc -shared -s -static-libgcc -o phylocomr.dll tmp.def nothing.o register.o -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_11_18_01_50_00_1577/RtmpyMlVhm/R.INSTALL2fb701ba364ac/phylocomr/src'
make[1]: Entering directory '/d/temp/2024_11_18_01_50_00_1577/RtmpyMlVhm/R.INSTALL2fb701ba364ac/phylocomr/src'
make[1]: Leaving directory '/d/temp/2024_11_18_01_50_00_1577/RtmpyMlVhm/R.INSTALL2fb701ba364ac/phylocomr/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-phylocomr/00new/phylocomr/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'phylocomr' as phylocomr_0.3.4.zip
* DONE (phylocomr)