* installing *source* package 'pegas' ...
** package 'pegas' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2024_12_18_01_50_01_11818/RtmpWI6u8i/R.INSTALL5cb478c8510c/pegas/src'
gcc  -I"D:/RCompile/recent/R/include" -DNDEBUG     -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mst.c -o mst.o
gcc  -I"D:/RCompile/recent/R/include" -DNDEBUG     -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c pegas.c -o pegas.o
gcc  -I"D:/RCompile/recent/R/include" -DNDEBUG     -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c readVCFbin.c -o readVCFbin.o
readVCFbin.c: In function 'read_bin_pegas':
readVCFbin.c:18:13: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
   18 |     int sz, retval;
      |             ^~~~~~
gcc  -I"D:/RCompile/recent/R/include" -DNDEBUG     -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c summary_loci_pegas.c -o summary_loci_pegas.o
gcc -shared -s -static-libgcc -o pegas.dll tmp.def mst.o pegas.o readVCFbin.o summary_loci_pegas.o -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_12_18_01_50_01_11818/RtmpWI6u8i/R.INSTALL5cb478c8510c/pegas/src'
make[1]: Entering directory '/d/temp/2024_12_18_01_50_01_11818/RtmpWI6u8i/R.INSTALL5cb478c8510c/pegas/src'
make[1]: Leaving directory '/d/temp/2024_12_18_01_50_01_11818/RtmpWI6u8i/R.INSTALL5cb478c8510c/pegas/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-pegas/00new/pegas/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'pegas' as pegas_1.3.zip
* DONE (pegas)