Install log for 'mvabund'

* installing *source* package 'mvabund' ...
** package 'mvabund' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
using C++11
make[1]: Entering directory '/d/temp/2024_12_18_01_50_01_11818/RtmpEba0my/R.INSTALL259fc76ac5099/mvabund/src'
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppGSL/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppGSL/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c Rinterface.cpp -o Rinterface.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppGSL/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c anova.cpp -o anova.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppGSL/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c calctest.cpp -o calctest.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppGSL/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c glm.cpp -o glm.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppGSL/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c glmtest.cpp -o glmtest.o
glmtest.cpp: In member function 'int GlmTest::resampNonCase(glm*, gsl_matrix*, unsigned int)':
glmtest.cpp:849:23: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized]
  849 |         gsl_sort_index(permid, tmp, 1, nRows);
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from resampTest.h:26,
                 from glmtest.cpp:5:
d:\rtools44\x86_64-w64-mingw32.static.posix\include\gsl\gsl_sort_double.h:41:6: note: by argument 2 of type 'const double*' to 'void gsl_sort_index(size_t*, const double*, size_t, size_t)' declared here
   41 | void gsl_sort_index (size_t * p, const double * data, const size_t stride, const size_t n);
      |      ^~~~~~~~~~~~~~
glmtest.cpp:876:23: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized]
  876 |         gsl_sort_index(permid, tmp, 1, nRows);
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
d:\rtools44\x86_64-w64-mingw32.static.posix\include\gsl\gsl_sort_double.h:41:6: note: by argument 2 of type 'const double*' to 'void gsl_sort_index(size_t*, const double*, size_t, size_t)' declared here
   41 | void gsl_sort_index (size_t * p, const double * data, const size_t stride, const size_t n);
      |      ^~~~~~~~~~~~~~
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppGSL/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c io.cpp -o io.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppGSL/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c rnd.cpp -o rnd.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppGSL/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c simutility.cpp -o simutility.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppGSL/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c summary.cpp -o summary.o
g++ -shared -s -static-libgcc -o mvabund.dll tmp.def RcppExports.o Rinterface.o anova.o calctest.o glm.o glmtest.o io.o rnd.o simutility.o summary.o -L/lib -lgsl -lgslcblas -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_12_18_01_50_01_11818/RtmpEba0my/R.INSTALL259fc76ac5099/mvabund/src'
make[1]: Entering directory '/d/temp/2024_12_18_01_50_01_11818/RtmpEba0my/R.INSTALL259fc76ac5099/mvabund/src'
make[1]: Leaving directory '/d/temp/2024_12_18_01_50_01_11818/RtmpEba0my/R.INSTALL259fc76ac5099/mvabund/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-mvabund/00new/mvabund/libs/x64
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'mvabund' as mvabund_4.2.1.zip
* DONE (mvabund)