* installing *source* package 'kmc' ...
** this is package 'kmc' version '0.4-2'
** package 'kmc' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 14.3.0'
using C++ compiler: 'g++.exe (GCC) 14.3.0'
make[1]: Entering directory '/d/temp/2025_12_28_01_50_00_8710/RtmpmSTfS1/R.INSTALL18e206df92194/kmc/src'
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"      -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c RcppExport.cpp -o RcppExport.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"      -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c kmc.cpp -o kmc.o
In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/RcppCommon.h:30,
                 from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp.h:27,
                 from common.h:5,
                 from kmc.cpp:1:
D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:27:21: note: '#pragma message: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410'
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
kmc.cpp: In function 'void kmc_native(double*, double*, double*, int*)':
kmc.cpp:239:28: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
  239 |         for (size_t j =0;j < n; j++) w[j] = 0.;
      |                          ~~^~~
kmc.cpp:243:18: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
  243 |         while (i < n - 1){
      |                ~~^~~~~~~
In file included from D:/RCompile/recent/R/include/R.h:73,
                 from common.h:4:
D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/exceptions.h: In function 'void Rcpp::Rf_warning(const char*, Args&& ...) [with Args = {const char*}]':
D:/RCompile/recent/R/include/R_ext/Error.h:89:17: warning: infinite recursion detected [-Winfinite-recursion]
   89 | #define warning Rf_warning
      |                 ^~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/exceptions.h:190:17: note: in expansion of macro 'warning'
  190 |     inline void warning(const char* fmt, Args&&... args ) {
      |                 ^~~~~~~
In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/RcppCommon.h:132:
D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/exceptions.h:191:19: note: recursive call
  191 |         Rf_warning("%s", tfm::format(fmt, std::forward<Args>(args)... ).c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"      -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c kmc_init.c -o kmc_init.o
gcc  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"      -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c surv2.c -o surv2.o
'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
g++ -std=gnu++17 -shared -s -static-libgcc -o kmc.dll tmp.def RcppExport.o kmc.o kmc_init.o surv2.o -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_12_28_01_50_00_8710/RtmpmSTfS1/R.INSTALL18e206df92194/kmc/src'
make[1]: Entering directory '/d/temp/2025_12_28_01_50_00_8710/RtmpmSTfS1/R.INSTALL18e206df92194/kmc/src'
'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
make[1]: Leaving directory '/d/temp/2025_12_28_01_50_00_8710/RtmpmSTfS1/R.INSTALL18e206df92194/kmc/src'
installing to d:/Rcompile/CRANpkg/lib/4.6/00LOCK-kmc/00new/kmc/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'kmc' as kmc_0.4-2.zip
* DONE (kmc)