* installing *source* package 'hipread' ...
** package 'hipread' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2024_12_22_01_50_00_26287/Rtmp44BVSJ/R.INSTALL74dc505759a7/hipread/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/deprecated_macros.hpp:8,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/sp_counted_base.hpp:22,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/shared_count.hpp:22,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/shared_ptr.hpp:17,
from boost.h:12,
from datasource.h:8,
from hipread_types.h:4,
from RcppExports.cpp:4:
D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/detail/atomic_count.hpp:10:1: note: '#pragma message: This header is deprecated. Use <boost/smart_ptr/detail/atomic_count.hpp> instead.'
10 | BOOST_HEADER_DEPRECATED("<boost/smart_ptr/detail/atomic_count.hpp>")
| ^~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c column.cpp -o column.o
In file included from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/deprecated_macros.hpp:8,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/sp_counted_base.hpp:22,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/shared_count.hpp:22,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/shared_ptr.hpp:17,
from boost.h:12,
from column.h:6,
from column.cpp:4:
D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/detail/atomic_count.hpp:10:1: note: '#pragma message: This header is deprecated. Use <boost/smart_ptr/detail/atomic_count.hpp> instead.'
10 | BOOST_HEADER_DEPRECATED("<boost/smart_ptr/detail/atomic_count.hpp>")
| ^~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c datasource.cpp -o datasource.o
In file included from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/deprecated_macros.hpp:8,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/sp_counted_base.hpp:22,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/shared_count.hpp:22,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/shared_ptr.hpp:17,
from boost.h:12,
from datasource.cpp:7:
D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/detail/atomic_count.hpp:10:1: note: '#pragma message: This header is deprecated. Use <boost/smart_ptr/detail/atomic_count.hpp> instead.'
10 | BOOST_HEADER_DEPRECATED("<boost/smart_ptr/detail/atomic_count.hpp>")
| ^~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c gzstream.cpp -o gzstream.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c iconv.cpp -o iconv.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c read_chunked.cpp -o read_chunked.o
In file included from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/deprecated_macros.hpp:8,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/sp_counted_base.hpp:22,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/shared_count.hpp:22,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/shared_ptr.hpp:17,
from boost.h:12,
from column.h:6,
from read_chunked.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/detail/atomic_count.hpp:10:1: note: '#pragma message: This header is deprecated. Use <boost/smart_ptr/detail/atomic_count.hpp> instead.'
10 | BOOST_HEADER_DEPRECATED("<boost/smart_ptr/detail/atomic_count.hpp>")
| ^~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c read_freqs.cpp -o read_freqs.o
In file included from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/deprecated_macros.hpp:8,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/sp_counted_base.hpp:22,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/shared_count.hpp:22,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/shared_ptr.hpp:17,
from boost.h:12,
from column.h:6,
from read_freqs.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/detail/atomic_count.hpp:10:1: note: '#pragma message: This header is deprecated. Use <boost/smart_ptr/detail/atomic_count.hpp> instead.'
10 | BOOST_HEADER_DEPRECATED("<boost/smart_ptr/detail/atomic_count.hpp>")
| ^~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c read_full.cpp -o read_full.o
In file included from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/deprecated_macros.hpp:8,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/sp_counted_base.hpp:22,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/shared_count.hpp:22,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/shared_ptr.hpp:17,
from boost.h:12,
from column.h:6,
from read_full.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/detail/atomic_count.hpp:10:1: note: '#pragma message: This header is deprecated. Use <boost/smart_ptr/detail/atomic_count.hpp> instead.'
10 | BOOST_HEADER_DEPRECATED("<boost/smart_ptr/detail/atomic_count.hpp>")
| ^~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c read_yield.cpp -o read_yield.o
In file included from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/deprecated_macros.hpp:8,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/sp_counted_base.hpp:22,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/shared_count.hpp:22,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/shared_ptr.hpp:17,
from boost.h:12,
from column.h:6,
from read_yield.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/detail/atomic_count.hpp:10:1: note: '#pragma message: This header is deprecated. Use <boost/smart_ptr/detail/atomic_count.hpp> instead.'
10 | BOOST_HEADER_DEPRECATED("<boost/smart_ptr/detail/atomic_count.hpp>")
| ^~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c rtinfo.cpp -o rtinfo.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c varinfo.cpp -o varinfo.o
g++ -std=gnu++17 -shared -s -static-libgcc -o hipread.dll tmp.def RcppExports.o column.o datasource.o gzstream.o iconv.o read_chunked.o read_freqs.o read_full.o read_yield.o rtinfo.o varinfo.o -lz -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_12_22_01_50_00_26287/Rtmp44BVSJ/R.INSTALL74dc505759a7/hipread/src'
make[1]: Entering directory '/d/temp/2024_12_22_01_50_00_26287/Rtmp44BVSJ/R.INSTALL74dc505759a7/hipread/src'
make[1]: Leaving directory '/d/temp/2024_12_22_01_50_00_26287/Rtmp44BVSJ/R.INSTALL74dc505759a7/hipread/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-hipread/00new/hipread/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'hipread' as hipread_0.2.4.zip
* DONE (hipread)