* installing *source* package 'flan' ...
** package 'flan' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2024_11_23_01_50_00_3284/Rtmpauag3h/R.INSTALL300781f8023ba/flan/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -Wall -pedantic -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -std=c++0x -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c FLAN_Clone.cpp -o FLAN_Clone.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -Wall -pedantic -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -std=c++0x -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c FLAN_MutationModel.cpp -o FLAN_MutationModel.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -Wall -pedantic -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -std=c++0x -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c FLAN_Sim.cpp -o FLAN_Sim.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -Wall -pedantic -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -std=c++0x -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c MATH_Function.cpp -o MATH_Function.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -Wall -pedantic -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -Wall -pedantic -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -std=c++0x -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c rcpp_flan_module.cpp -o rcpp_flan_module.o
In file included from D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp.h:46,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from MATH_Function.h:5,
from FLAN_Clone.h:25,
from FLAN_Sim.h:28,
from rcpp_flan_module.h:4,
from rcpp_flan_module.cpp:1:
D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/XPtr.h: In instantiation of 'void Rcpp::standard_delete_finalizer(T*) [with T = FLAN_ExponentialClone]':
D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/module/class.h:38:35: required from 'class Rcpp::class_<FLAN_ExponentialClone>'
rcpp_flan_module.cpp:42:47: required from here
D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of polymorphic class type 'FLAN_ExponentialClone' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
31 | delete obj;
| ^~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/XPtr.h: In instantiation of 'void Rcpp::standard_delete_finalizer(T*) [with T = FLAN_DiracClone]':
D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/module/class.h:38:35: required from 'class Rcpp::class_<FLAN_DiracClone>'
rcpp_flan_module.cpp:50:41: required from here
D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of polymorphic class type 'FLAN_DiracClone' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/XPtr.h: In instantiation of 'void Rcpp::standard_delete_finalizer(T*) [with T = FLAN_InhomogeneousClone]':
D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/module/class.h:38:35: required from 'class Rcpp::class_<FLAN_InhomogeneousClone>'
rcpp_flan_module.cpp:58:49: required from here
D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of polymorphic class type 'FLAN_InhomogeneousClone' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
g++ -std=gnu++17 -shared -s -static-libgcc -o flan.dll tmp.def FLAN_Clone.o FLAN_MutationModel.o FLAN_Sim.o MATH_Function.o init.o rcpp_flan_module.o -L/lib/x64 -lgsl -lgslcblas -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_11_23_01_50_00_3284/Rtmpauag3h/R.INSTALL300781f8023ba/flan/src'
make[1]: Entering directory '/d/temp/2024_11_23_01_50_00_3284/Rtmpauag3h/R.INSTALL300781f8023ba/flan/src'
make[1]: Leaving directory '/d/temp/2024_11_23_01_50_00_3284/Rtmpauag3h/R.INSTALL300781f8023ba/flan/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-flan/00new/flan/libs/x64
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'flan' as flan_1.0.zip
* DONE (flan)