* installing *source* package 'epiworldR' ...
** package 'epiworldR' successfully unpacked and MD5 sums checked
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2024_11_18_01_50_00_1577/RtmpqIQ3pq/R.INSTALL235ec5d6f338f/epiworldR/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c actions.cpp -o actions.o
In file included from D:/RCompile/CRANpkg/lib/4.5/cpp11/include/cpp11.hpp:3,
from actions.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/cpp11/include/cpp11/R.hpp:11: warning: "R_NO_REMAP" redefined
11 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c agents.cpp -o agents.o
In file included from D:/RCompile/CRANpkg/lib/4.5/cpp11/include/cpp11.hpp:3,
from agents.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/cpp11/include/cpp11/R.hpp:11: warning: "R_NO_REMAP" redefined
11 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c cpp11.cpp -o cpp11.o
In file included from D:/RCompile/CRANpkg/lib/4.5/cpp11/include/cpp11.hpp:3,
from D:/RCompile/CRANpkg/lib/4.5/cpp11/include/cpp11/declarations.hpp:13,
from cpp11.cpp:5:
D:/RCompile/CRANpkg/lib/4.5/cpp11/include/cpp11/R.hpp:11: warning: "R_NO_REMAP" redefined
11 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c db.cpp -o db.o
In file included from D:/RCompile/CRANpkg/lib/4.5/cpp11/include/cpp11.hpp:3,
from db.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/cpp11/include/cpp11/R.hpp:11: warning: "R_NO_REMAP" redefined
11 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c entities.cpp -o entities.o
In file included from D:/RCompile/CRANpkg/lib/4.5/cpp11/include/cpp11.hpp:3,
from entities.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/cpp11/include/cpp11/R.hpp:11: warning: "R_NO_REMAP" redefined
11 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c epimodels.cpp -o epimodels.o
In file included from D:/RCompile/CRANpkg/lib/4.5/cpp11/include/cpp11.hpp:3,
from epimodels.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/cpp11/include/cpp11/R.hpp:11: warning: "R_NO_REMAP" redefined
11 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
In file included from ../inst/include/epiworld/epiworld.hpp:40,
from epiworld-common.h:4,
from epimodels.cpp:5:
In member function 'epiworld::UserData<int>& epiworld::UserData<int>::operator=(epiworld::UserData<int>&&)',
inlined from 'void epiworld::DataBase<TSeq>::set_user_data(std::vector<std::__cxx11::basic_string<char> >) [with TSeq = int]' at ../inst/include/epiworld/database-meat.hpp:1049:15,
inlined from 'void epiworld::Model<TSeq>::set_user_data(std::vector<std::__cxx11::basic_string<char> >) [with TSeq = int]' at ../inst/include/epiworld/model-meat.hpp:2172:21,
inlined from 'epiworld::epimodels::ModelSURV<TSeq>::ModelSURV(epiworld::epimodels::ModelSURV<TSeq>&, const std::string&, long long unsigned int, float, float, float, float, float, float, float, float, float, float, float) [with TSeq = int]' at ../inst/include/epiworld/models/surveillance.hpp:335:24,
inlined from 'epiworld::epimodels::ModelSURV<TSeq>::ModelSURV(const std::string&, long long unsigned int, float, float, float, float, float, float, float, float, float, float, float) [with TSeq = int]' at ../inst/include/epiworld/models/surveillance.hpp:369:5:
../inst/include/epiworld/userdata-bones.hpp:16:7: warning: '<anonymous>.epiworld::UserData<int>::model' may be used uninitialized [-Wmaybe-uninitialized]
16 | class UserData
| ^~~~~~~~
In file included from ../inst/include/epiworld/epiworld.hpp:46:
../inst/include/epiworld/database-meat.hpp: In function 'epiworld::epimodels::ModelSURV<TSeq>::ModelSURV(const std::string&, long long unsigned int, float, float, float, float, float, float, float, float, float, float, float) [with TSeq = int]':
../inst/include/epiworld/database-meat.hpp:1049:17: note: '<anonymous>' declared here
1049 | user_data = UserData<TSeq>(names);
| ^~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c model.cpp -o model.o
In file included from D:/RCompile/CRANpkg/lib/4.5/cpp11/include/cpp11.hpp:3,
from model.cpp:1:
D:/RCompile/CRANpkg/lib/4.5/cpp11/include/cpp11/R.hpp:11: warning: "R_NO_REMAP" redefined
11 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c tool.cpp -o tool.o
In file included from D:/RCompile/CRANpkg/lib/4.5/cpp11/include/cpp11.hpp:3,
from tool.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/cpp11/include/cpp11/R.hpp:11: warning: "R_NO_REMAP" redefined
11 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c virus.cpp -o virus.o
In file included from D:/RCompile/CRANpkg/lib/4.5/cpp11/include/cpp11.hpp:3,
from virus.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/cpp11/include/cpp11/R.hpp:11: warning: "R_NO_REMAP" redefined
11 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -shared -s -static-libgcc -o epiworldR.dll tmp.def actions.o agents.o cpp11.o db.o entities.o epimodels.o model.o tool.o virus.o -fopenmp -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_11_18_01_50_00_1577/RtmpqIQ3pq/R.INSTALL235ec5d6f338f/epiworldR/src'
make[1]: Entering directory '/d/temp/2024_11_18_01_50_00_1577/RtmpqIQ3pq/R.INSTALL235ec5d6f338f/epiworldR/src'
make[1]: Leaving directory '/d/temp/2024_11_18_01_50_00_1577/RtmpqIQ3pq/R.INSTALL235ec5d6f338f/epiworldR/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-epiworldR/00new/epiworldR/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'epiworldR' as epiworldR_0.3-2.zip
* DONE (epiworldR)