* installing *source* package 'baygel' ...
** package 'baygel' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
using C++ compiler: 'g++.exe (GCC) 13.3.0'
using C++17
make[1]: Entering directory '/d/temp/2024_12_22_01_50_00_26287/Rtmp2X0DAo/R.INSTALL1e1dc47e4523d/baygel/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c blockBAGENI.cpp -o blockBAGENI.o
blockBAGENI.cpp: In function 'Rcpp::List blockBAGENI(arma::mat, int, int, bool, double, double, double, double)':
blockBAGENI.cpp:112:19: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
112 | for (int i=0; i<low_tri_tau_vals.size(); i++){
| ~^~~~~~~~~~~~~~~~~~~~~~~~
blockBAGENI.cpp:127:21: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
127 | for(int i = 0; i < upperind.size(); i++)
| ~~^~~~~~~~~~~~~~~~~
blockBAGENI.cpp:131:21: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
131 | for(int i = 0; i < lowerind.size(); i++)
| ~~^~~~~~~~~~~~~~~~~
blockBAGENI.cpp:138:24: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
138 | for(int idx=0; idx<ind_noi.size(); idx++){
| ~~~^~~~~~~~~~~~~~~
blockBAGENI.cpp:144:26: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
144 | for(int idx1=0; idx1<ind_noi.size(); idx1++){
| ~~~~^~~~~~~~~~~~~~~
blockBAGENI.cpp:146:28: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
146 | for(int idx2=0; idx2<ind_noi.size(); idx2++){
| ~~~~^~~~~~~~~~~~~~~
blockBAGENI.cpp:158:24: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
158 | for(int idx=0; idx<ind_noi.size(); idx++){
| ~~~^~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c blockBAGENII.cpp -o blockBAGENII.o
blockBAGENII.cpp: In function 'Rcpp::List blockBAGENII(arma::mat, int, int, bool, double, double)':
blockBAGENII.cpp:112:19: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
112 | for (int i=0; i<low_tri_tau_vals.size(); i++){
| ~^~~~~~~~~~~~~~~~~~~~~~~~
blockBAGENII.cpp:125:21: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
125 | for(int i = 0; i < upperind.size(); i++)
| ~~^~~~~~~~~~~~~~~~~
blockBAGENII.cpp:129:21: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
129 | for(int i = 0; i < lowerind.size(); i++)
| ~~^~~~~~~~~~~~~~~~~
blockBAGENII.cpp:136:24: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
136 | for(int idx=0; idx<ind_noi.size(); idx++){
| ~~~^~~~~~~~~~~~~~~
blockBAGENII.cpp:142:26: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
142 | for(int idx1=0; idx1<ind_noi.size(); idx1++){
| ~~~~^~~~~~~~~~~~~~~
blockBAGENII.cpp:144:28: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
144 | for(int idx2=0; idx2<ind_noi.size(); idx2++){
| ~~~~^~~~~~~~~~~~~~~
blockBAGENII.cpp:156:24: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
156 | for(int idx=0; idx<ind_noi.size(); idx++){
| ~~~^~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c blockBAGL.cpp -o blockBAGL.o
blockBAGL.cpp: In function 'Rcpp::List blockBAGL(arma::mat, int, int, bool, double, double)':
blockBAGL.cpp:109:20: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
109 | for (int i=0; i<low_tri_tau_vals.size(); i++){
| ~^~~~~~~~~~~~~~~~~~~~~~~~
blockBAGL.cpp:118:22: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
118 | for(int i = 0; i < upperind.size(); i++)
| ~~^~~~~~~~~~~~~~~~~
blockBAGL.cpp:122:22: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
122 | for(int i = 0; i < lowerind.size(); i++)
| ~~^~~~~~~~~~~~~~~~~
blockBAGL.cpp:129:25: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
129 | for(int idx=0; idx<ind_noi.size(); idx++){
| ~~~^~~~~~~~~~~~~~~
blockBAGL.cpp:135:27: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
135 | for(int idx1=0; idx1<ind_noi.size(); idx1++){
| ~~~~^~~~~~~~~~~~~~~
blockBAGL.cpp:137:29: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
137 | for(int idx2=0; idx2<ind_noi.size(); idx2++){
| ~~~~^~~~~~~~~~~~~~~
blockBAGL.cpp:149:25: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
149 | for(int idx=0; idx<ind_noi.size(); idx++){
| ~~~^~~~~~~~~~~~~~~
blockBAGL.cpp:160:27: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
160 | for(int idx1=0; idx1<ind_noi.size(); idx1++){
| ~~~~^~~~~~~~~~~~~~~
blockBAGL.cpp:162:29: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
162 | for(int idx2=0; idx2<ind_noi.size(); idx2++){
| ~~~~^~~~~~~~~~~~~~~
blockBAGL.cpp:168:25: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
168 | for(int idx=0; idx<ind_noi.size(); idx++){
| ~~~^~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c blockBAGR.cpp -o blockBAGR.o
blockBAGR.cpp: In function 'Rcpp::List blockBAGR(arma::mat, int, int, bool, double, double)':
blockBAGR.cpp:109:20: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
109 | for (int i=0; i<low_tri_tau_vals.size(); i++){
| ~^~~~~~~~~~~~~~~~~~~~~~~~
blockBAGR.cpp:115:22: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
115 | for(int i = 0; i < upperind.size(); i++)
| ~~^~~~~~~~~~~~~~~~~
blockBAGR.cpp:119:22: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
119 | for(int i = 0; i < lowerind.size(); i++)
| ~~^~~~~~~~~~~~~~~~~
blockBAGR.cpp:126:25: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
126 | for(int idx=0; idx<ind_noi.size(); idx++){
| ~~~^~~~~~~~~~~~~~~
blockBAGR.cpp:132:27: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
132 | for(int idx1=0; idx1<ind_noi.size(); idx1++){
| ~~~~^~~~~~~~~~~~~~~
blockBAGR.cpp:134:29: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
134 | for(int idx2=0; idx2<ind_noi.size(); idx2++){
| ~~~~^~~~~~~~~~~~~~~
blockBAGR.cpp:146:25: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
146 | for(int idx=0; idx<ind_noi.size(); idx++){
| ~~~^~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c blockBGEN.cpp -o blockBGEN.o
blockBGEN.cpp: In function 'Rcpp::List blockBGEN(arma::mat, int, int, double, double, bool)':
blockBGEN.cpp:110:19: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
110 | for (int i=0; i<low_tri_tau_vals.size(); i++){
| ~^~~~~~~~~~~~~~~~~~~~~~~~
blockBGEN.cpp:116:21: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
116 | for(int i = 0; i < upperind.size(); i++)
| ~~^~~~~~~~~~~~~~~~~
blockBGEN.cpp:120:21: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
120 | for(int i = 0; i < lowerind.size(); i++)
| ~~^~~~~~~~~~~~~~~~~
blockBGEN.cpp:127:24: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
127 | for(int idx=0; idx<ind_noi.size(); idx++){
| ~~~^~~~~~~~~~~~~~~
blockBGEN.cpp:133:26: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
133 | for(int idx1=0; idx1<ind_noi.size(); idx1++){
| ~~~~^~~~~~~~~~~~~~~
blockBGEN.cpp:135:28: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
135 | for(int idx2=0; idx2<ind_noi.size(); idx2++){
| ~~~~^~~~~~~~~~~~~~~
blockBGEN.cpp:147:24: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
147 | for(int idx=0; idx<ind_noi.size(); idx++){
| ~~~^~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c blockBGL.cpp -o blockBGL.o
blockBGL.cpp: In function 'Rcpp::List blockBGL(arma::mat, int, int, double, bool)':
blockBGL.cpp:100:19: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
100 | for (int i=0; i<low_tri_tau_vals.size(); i++){
| ~^~~~~~~~~~~~~~~~~~~~~~~~
blockBGL.cpp:105:21: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
105 | for(int i = 0; i < upperind.size(); i++)
| ~~^~~~~~~~~~~~~~~~~
blockBGL.cpp:109:21: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
109 | for(int i = 0; i < lowerind.size(); i++)
| ~~^~~~~~~~~~~~~~~~~
blockBGL.cpp:116:24: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
116 | for(int idx=0; idx<ind_noi.size(); idx++){
| ~~~^~~~~~~~~~~~~~~
blockBGL.cpp:122:26: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
122 | for(int idx1=0; idx1<ind_noi.size(); idx1++){
| ~~~~^~~~~~~~~~~~~~~
blockBGL.cpp:124:28: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
124 | for(int idx2=0; idx2<ind_noi.size(); idx2++){
| ~~~~^~~~~~~~~~~~~~~
blockBGL.cpp:136:24: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
136 | for(int idx=0; idx<ind_noi.size(); idx++){
| ~~~^~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c blockBGR.cpp -o blockBGR.o
blockBGR.cpp: In function 'Rcpp::List blockBGR(arma::mat, int, int, double, bool)':
blockBGR.cpp:100:17: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
100 | for (int i=0; i<low_tri_tau_vals.size(); i++){
| ~^~~~~~~~~~~~~~~~~~~~~~~~
blockBGR.cpp:103:19: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
103 | for(int i = 0; i < upperind.size(); i++)
| ~~^~~~~~~~~~~~~~~~~
blockBGR.cpp:107:19: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
107 | for(int i = 0; i < lowerind.size(); i++)
| ~~^~~~~~~~~~~~~~~~~
blockBGR.cpp:122:24: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
122 | for(int idx=0; idx<ind_noi.size(); idx++){
| ~~~^~~~~~~~~~~~~~~
blockBGR.cpp:128:26: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
128 | for(int idx1=0; idx1<ind_noi.size(); idx1++){
| ~~~~^~~~~~~~~~~~~~~
blockBGR.cpp:130:28: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
130 | for(int idx2=0; idx2<ind_noi.size(); idx2++){
| ~~~~^~~~~~~~~~~~~~~
blockBGR.cpp:142:24: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
142 | for(int idx=0; idx<ind_noi.size(); idx++){
| ~~~^~~~~~~~~~~~~~~
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c mvnorm.cpp -o mvnorm.o
g++ -shared -s -static-libgcc -o baygel.dll tmp.def RcppExports.o blockBAGENI.o blockBAGENII.o blockBAGL.o blockBAGR.o blockBGEN.o blockBGL.o blockBGR.o init.o mvnorm.o -fopenmp -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_12_22_01_50_00_26287/Rtmp2X0DAo/R.INSTALL1e1dc47e4523d/baygel/src'
make[1]: Entering directory '/d/temp/2024_12_22_01_50_00_26287/Rtmp2X0DAo/R.INSTALL1e1dc47e4523d/baygel/src'
make[1]: Leaving directory '/d/temp/2024_12_22_01_50_00_26287/Rtmp2X0DAo/R.INSTALL1e1dc47e4523d/baygel/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-baygel/00new/baygel/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'baygel' as baygel_0.3.0.zip
* DONE (baygel)