* installing *source* package 'SimInf' ...
** package 'SimInf' successfully unpacked and MD5 sums checked
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2024_11_18_01_50_00_1577/Rtmpc1d1zJ/R.INSTALL622c65453365/SimInf/src'
rm -f SimInf.dll init.o SimInf.o solvers/SimInf_solver.o solvers/aem/SimInf_solver_aem.o solvers/ssm/SimInf_solver_ssm.o misc/SimInf_abc.o misc/SimInf_arg.o misc/SimInf_clean_indiv_events.o misc/SimInf_distance_matrix.o misc/SimInf_forward_euler_linear_decay.o misc/SimInf_ldata.o misc/SimInf_local_spread.o misc/SimInf_openmp.o misc/SimInf_particle_filter.o misc/SimInf_trajectory.o misc/binheap.o models/SEIR.o models/SIR.o models/SIS.o models/SISe.o models/SISe3.o models/SISe3_sp.o models/SISe_sp.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SimInf.c -o SimInf.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c solvers/SimInf_solver.c -o solvers/SimInf_solver.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c solvers/aem/SimInf_solver_aem.c -o solvers/aem/SimInf_solver_aem.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c solvers/ssm/SimInf_solver_ssm.c -o solvers/ssm/SimInf_solver_ssm.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c misc/SimInf_abc.c -o misc/SimInf_abc.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c misc/SimInf_arg.c -o misc/SimInf_arg.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c misc/SimInf_clean_indiv_events.c -o misc/SimInf_clean_indiv_events.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c misc/SimInf_distance_matrix.c -o misc/SimInf_distance_matrix.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c misc/SimInf_forward_euler_linear_decay.c -o misc/SimInf_forward_euler_linear_decay.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c misc/SimInf_ldata.c -o misc/SimInf_ldata.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c misc/SimInf_local_spread.c -o misc/SimInf_local_spread.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c misc/SimInf_openmp.c -o misc/SimInf_openmp.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c misc/SimInf_particle_filter.c -o misc/SimInf_particle_filter.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c misc/SimInf_trajectory.c -o misc/SimInf_trajectory.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c misc/binheap.c -o misc/binheap.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c models/SEIR.c -o models/SEIR.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c models/SIR.c -o models/SIR.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c models/SIS.c -o models/SIS.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c models/SISe.c -o models/SISe.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c models/SISe3.c -o models/SISe3.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c models/SISe3_sp.c -o models/SISe3_sp.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I../inst/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c models/SISe_sp.c -o models/SISe_sp.o
gcc -shared -s -static-libgcc -o SimInf.dll SimInf-win.def init.o SimInf.o solvers/SimInf_solver.o solvers/aem/SimInf_solver_aem.o solvers/ssm/SimInf_solver_ssm.o misc/SimInf_abc.o misc/SimInf_arg.o misc/SimInf_clean_indiv_events.o misc/SimInf_distance_matrix.o misc/SimInf_forward_euler_linear_decay.o misc/SimInf_ldata.o misc/SimInf_local_spread.o misc/SimInf_openmp.o misc/SimInf_particle_filter.o misc/SimInf_trajectory.o misc/binheap.o models/SEIR.o models/SIR.o models/SIS.o models/SISe.o models/SISe3.o models/SISe3_sp.o models/SISe_sp.o -lm -lgsl -lgslcblas -fopenmp -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_11_18_01_50_00_1577/Rtmpc1d1zJ/R.INSTALL622c65453365/SimInf/src'
make[1]: Entering directory '/d/temp/2024_11_18_01_50_00_1577/Rtmpc1d1zJ/R.INSTALL622c65453365/SimInf/src'
make[1]: Leaving directory '/d/temp/2024_11_18_01_50_00_1577/Rtmpc1d1zJ/R.INSTALL622c65453365/SimInf/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-SimInf/00new/SimInf/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'SimInf' as SimInf_9.8.1.zip
* DONE (SimInf)