* installing *source* package 'SimBIID' ...
** package 'SimBIID' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
using C++11
make[1]: Entering directory '/d/temp/2024_12_18_01_50_01_11818/RtmpQ18JcQ/R.INSTALL853864141599/SimBIID/src'
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c adaptUpdate.cpp -o adaptUpdate.o
In file included from functions.h:9,
                 from adaptUpdate.cpp:1:
D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/Benchmark/Timer.h:29: warning: "R_NO_REMAP" redefined
   29 | #define R_NO_REMAP
      | 
<command-line>: note: this is the location of the previous definition
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c bootstrapParticleFilter.cpp -o bootstrapParticleFilter.o
In file included from functions.h:9,
                 from bootstrapParticleFilter.cpp:1:
D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/Benchmark/Timer.h:29: warning: "R_NO_REMAP" redefined
   29 | #define R_NO_REMAP
      | 
<command-line>: note: this is the location of the previous definition
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c bootstrapParticleFilterState.cpp -o bootstrapParticleFilterState.o
In file included from functions.h:9,
                 from bootstrapParticleFilterState.cpp:1:
D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/Benchmark/Timer.h:29: warning: "R_NO_REMAP" redefined
   29 | #define R_NO_REMAP
      | 
<command-line>: note: this is the location of the previous definition
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c cholArma.cpp -o cholArma.o
In file included from functions.h:9,
                 from cholArma.cpp:1:
D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/Benchmark/Timer.h:29: warning: "R_NO_REMAP" redefined
   29 | #define R_NO_REMAP
      | 
<command-line>: note: this is the location of the previous definition
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c mvrnormArma.cpp -o mvrnormArma.o
In file included from functions.h:9,
                 from mvrnormArma.cpp:1:
D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/Benchmark/Timer.h:29: warning: "R_NO_REMAP" redefined
   29 | #define R_NO_REMAP
      | 
<command-line>: note: this is the location of the previous definition
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c pmcmc.cpp -o pmcmc.o
In file included from functions.h:9,
                 from pmcmc.cpp:1:
D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/Benchmark/Timer.h:29: warning: "R_NO_REMAP" redefined
   29 | #define R_NO_REMAP
      | 
<command-line>: note: this is the location of the previous definition
g++ -shared -s -static-libgcc -o SimBIID.dll tmp.def RcppExports.o adaptUpdate.o bootstrapParticleFilter.o bootstrapParticleFilterState.o cholArma.o mvrnormArma.o pmcmc.o -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_12_18_01_50_01_11818/RtmpQ18JcQ/R.INSTALL853864141599/SimBIID/src'
make[1]: Entering directory '/d/temp/2024_12_18_01_50_01_11818/RtmpQ18JcQ/R.INSTALL853864141599/SimBIID/src'
make[1]: Leaving directory '/d/temp/2024_12_18_01_50_01_11818/RtmpQ18JcQ/R.INSTALL853864141599/SimBIID/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-SimBIID/00new/SimBIID/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'SimBIID' as SimBIID_0.2.1.zip
* DONE (SimBIID)