* installing *source* package 'RNifti' ...
** package 'RNifti' successfully unpacked and MD5 sums checked
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2024_11_18_01_50_00_1577/Rtmp63wLrC/R.INSTALL1730c510b1c85/RNifti/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c main.cpp -o main.o
In file included from ../inst/include/niftilib/nifti2_io.h:27,
from ../inst/include/RNifti.h:46,
from main.cpp:5:
../inst/include/RNifti/NiftiImage_print.h:6: warning: "R_NO_REMAP" redefined
6 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c zzz.c -o zzz.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c znzlib/znzlib.c -o znzlib/znzlib.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c niftilib/nifti1_io.c -o niftilib/nifti1_io.o
niftilib/nifti1_io.c:449:14: warning: 'print_hex_vals' declared 'static' but never defined [-Wunused-function]
449 | static int print_hex_vals (const char * data, size_t nbytes, FILE * fp);
| ^~~~~~~~~~~~~~
niftilib/nifti1_io.c:6135:14: warning: 'escapize_string' defined but not used [-Wunused-function]
6135 | static char *escapize_string( const char * str )
| ^~~~~~~~~~~~~~~
niftilib/nifti1_io.c:3337:12: warning: 'compare_strlist' defined but not used [-Wunused-function]
3337 | static int compare_strlist(const char * str, char ** strlist, int len)
| ^~~~~~~~~~~~~~~
niftilib/nifti1_io.c:3323:12: warning: 'make_lowercase' defined but not used [-Wunused-function]
3323 | static int make_lowercase(char * str)
| ^~~~~~~~~~~~~~
niftilib/nifti1_io.c:3310:12: warning: 'make_uppercase' defined but not used [-Wunused-function]
3310 | static int make_uppercase(char * str)
| ^~~~~~~~~~~~~~
niftilib/nifti1_io.c:3292:12: warning: 'is_mixedcase' defined but not used [-Wunused-function]
3292 | static int is_mixedcase(const char * str)
| ^~~~~~~~~~~~
niftilib/nifti1_io.c:3276:12: warning: 'is_uppercase' defined but not used [-Wunused-function]
3276 | static int is_uppercase(const char * str)
| ^~~~~~~~~~~~
niftilib/nifti1_io.c:363:29: warning: 'nifti_type_list' defined but not used [-Wunused-const-variable=]
363 | static const nifti_type_ele nifti_type_list[] = {
| ^~~~~~~~~~~~~~~
niftilib/nifti1_io.c:353:19: warning: 'gni_version' defined but not used [-Wunused-const-variable=]
353 | static const char gni_version[] = NIFTI1_IO_SOURCE_VERSION " (16 Jun, 2022)";
| ^~~~~~~~~~~
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c niftilib/nifti2_io.c -o niftilib/nifti2_io.o
niftilib/nifti2_io.c:8250:14: warning: 'escapize_string' defined but not used [-Wunused-function]
8250 | static char *escapize_string( const char * str )
| ^~~~~~~~~~~~~~~
niftilib/nifti2_io.c:4468:12: warning: 'print_hex_vals' defined but not used [-Wunused-function]
4468 | static int print_hex_vals( const char * data, size_t nbytes, FILE * fp )
| ^~~~~~~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o RNifti.dll tmp.def main.o zzz.o znzlib/znzlib.o niftilib/nifti1_io.o niftilib/nifti2_io.o -lz -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_11_18_01_50_00_1577/Rtmp63wLrC/R.INSTALL1730c510b1c85/RNifti/src'
make[1]: Entering directory '/d/temp/2024_11_18_01_50_00_1577/Rtmp63wLrC/R.INSTALL1730c510b1c85/RNifti/src'
make[1]: Leaving directory '/d/temp/2024_11_18_01_50_00_1577/Rtmp63wLrC/R.INSTALL1730c510b1c85/RNifti/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-RNifti/00new/RNifti/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'RNifti' as RNifti_1.7.0.zip
* DONE (RNifti)