Install log for 'RNetCDF'

* installing *source* package 'RNetCDF' ...
** package 'RNetCDF' successfully unpacked and MD5 sums checked
** using staged installation
configure: loading site script /usr/local/etc/config.site
configure: Find compiler/linker variables from environment:
checking CFLAGS... -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign
checking CPPFLAGS... 
checking LDFLAGS... 
checking LIBS... -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lnetcdf -lcurl -lxml2 -lz -liconv -lm -lws2_32 -llzma -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -llzma -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lcurl -lidn2 -lunistring -liconv -lcharset -lssh2 -lssh2 -lgcrypt -lgpg-error -lws2_32 -lgcrypt -lgpg-error -lws2_32 -lgcrypt -lgpg-error -lws2_32 -lz -lpsl -lunistring -lws2_32 -lidn2 -lunistring -liconv -lcharset -lbcrypt -ladvapi32 -lcrypt32 -lssl -lcrypto -lssl -lz -lws2_32 -lgdi32 -lcrypt32 -lcrypto -lz -lws2_32 -lgdi32 -lcrypt32 -lgdi32 -lwldap32 -lzstd -lbrotlidec -lbrotlidec -lbrotlicommon -lz -lpsl -lunistring -lws2_32 -lidn2 -lunistring -liconv -lcharset -lbrotlidec -lbrotlicommon -lpthread -lidn2 -lunistring -liconv -lcharset -lssh2 -lgcrypt -lgpg-error -lws2_32 -lgcrypt -lgpg-error -lws2_32 -lws2_32 -lz -lpsl -lunistring -lws2_32 -lidn2 -lunistring -liconv -lcharset -lbcrypt -ladvapi32 -lcrypt32 -lssl -lcrypto -lz -lws2_32 -lgdi32 -lcrypt32 -lcrypto -lz -lws2_32 -lgdi32 -lcrypt32 -lgdi32 -lwldap32 -lbrotlidec -lbrotlidec -lbrotlicommon -lunistring -lws2_32 -lidn2 -lunistring -liconv -lcharset -lbrotlicommon -lpthread -liconv -lcharset -lz -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lbrotlicommon -LD:/rtools44/x86_64-w64-mingw32.static.posix -LD:/rtools44/x86_64-w64-mingw32.static.posix -lz -lws2_32 -lgdi32 -lcrypt32 -lcrypto -lz -lgdi32 -lcrypt32 -lunistring -lidn2 -lunistring -liconv -lcharset -lgcrypt -lgpg-error -lws2_32 -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lgcrypt -lgpg-error -lws2_32 -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lws2_32 -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -liconv -lcharset -lz -lbrotlidec -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lbrotlicommon -lzstd -lssl -LD:/rtools44/x86_64-w64-mingw32.static.posix -lz -lws2_32 -lgdi32 -lcrypt32 -lcrypto -lz -lgdi32 -lcrypt32 -lunistring -liconv -lcharset -lssh2 -lgcrypt -lgpg-error -lws2_32 -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lgcrypt -lgpg-error -lws2_32 -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lgcrypt -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lgpg-error -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lpsl -lunistring -lws2_32 -lidn2 -lunistring -liconv -lcharset -ldf -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -ljpeg -lmfhdf -lportablexdr -lws2_32 -ldf -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -ljpeg -lz -lhdf5 -lm -ldl -lws2_32 -lwsock32 -lz -lsz -lhdf5_hl -lhdf5 -lm -ldl -lws2_32 -lwsock32 -lz -lsz -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lhdf5 -lm -ldl -lws2_32 -lwsock32 -lz -lsz 
configure: Select C compiler:
checking C compiler from --with-mpicc... 
checking C compiler from R... gcc
configure: Find compiler/linker variables from R:
checking R_CFLAGS... -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign
checking R_CPPFLAGS... 
checking R_LDFLAGS... 
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for gcc options needed to detect all undeclared functions... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking whether _WIN32 is declared... yes
configure: Operating system is Windows
configure: Skipping nc-config
configure: Find libraries that may be needed on Windows:
checking for library containing atan... none required
checking for library containing pthread_mutex_init... none required
checking for library containing lzma_lzma_decoder_init... none required
checking for library containing deflate... none required
checking for library containing ZSTD_decompress... none required
checking for library containing SZ_BufftoBuffDecompress... none required
checking for library containing BCryptDecrypt... none required
checking for library containing gpg_strerror... none required
checking for library containing gcry_md_open... none required
checking for library containing EVP_CIPHER_CTX_new... none required
checking for library containing SSL_CTX_new... none required
checking for library containing libssh2_init... none required
checking for library containing libiconv_open... none required
checking for library containing locale_charset... none required
checking for library containing u8_to_u16... none required
checking for library containing idn2_to_ascii_8z... none required
checking for library containing H5Fopen... none required
checking for library containing H5TBmake_table... none required
checking for library containing xdr_int... none required
checking for library containing xmlReadMemory... none required
checking for library containing nghttp2_submit_request... no
checking for library containing curl_easy_init... none required
checking for library containing jpeg_start_compress... none required
checking for library containing Hopen... none required
checking for library containing SDstart... none required
configure: Check compiler type sizes and language features
checking size of int... 4
checking size of long long... 8
checking size of size_t... 8
checking for C/C++ restrict keyword... __restrict__
configure: Check NetCDF features:
checking for netcdf.h... yes
checking for library containing nc_open... none required
checking for nc_rename_grp... yes
checking for nc_get_var_chunk_cache... yes
checking for nc_inq_var_szip... yes
checking for nc_inq_var_endian... yes
checking for nc_def_var_filter... yes
checking for nc_inq_var_filter_ids... yes
checking for nc_inq_var_filter_info... yes
checking for nc_reclaim_data... yes
checking for netcdf_filter.h... yes
checking whether NC_64BIT_DATA is declared... yes
checking whether NC_FORMAT_64BIT_DATA is declared... yes
checking whether NC_DISKLESS is declared... yes
checking whether NC_PERSIST is declared... yes
configure: Check for parallel NetCDF features:
checking for mpi.h... yes
checking for MPI_Init... no
configure: WARNING: MPI not available. Specify --with-mpicc if needed.
configure: WARNING: NetCDF parallel I/O requires MPI
configure: Check for udunits2 features:
checking for library containing XML_ErrorString... -lexpat
checking for library containing ut_read_xml... -ludunits2
checking for ut_offset_by_time... yes
checking for ut_decode_time... yes
checking for ut_encode_time... yes
checking for udunits2.h... yes
configure: Final compiler and linker variables for make:
CC=gcc
PKG_CFLAGS=-pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign
PKG_CPPFLAGS=
PKG_LDFLAGS=
LIBS=-ludunits2 -lexpat -ladvapi32 -lgdi32 -lcrypt32 -lwldap32 -lwsock32 -lws2_32 -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lnetcdf -lcurl -lxml2 -lz -liconv -lm -lws2_32 -llzma -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -llzma -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lcurl -lidn2 -lunistring -liconv -lcharset -lssh2 -lssh2 -lgcrypt -lgpg-error -lws2_32 -lgcrypt -lgpg-error -lws2_32 -lgcrypt -lgpg-error -lws2_32 -lz -lpsl -lunistring -lws2_32 -lidn2 -lunistring -liconv -lcharset -lbcrypt -ladvapi32 -lcrypt32 -lssl -lcrypto -lssl -lz -lws2_32 -lgdi32 -lcrypt32 -lcrypto -lz -lws2_32 -lgdi32 -lcrypt32 -lgdi32 -lwldap32 -lzstd -lbrotlidec -lbrotlidec -lbrotlicommon -lz -lpsl -lunistring -lws2_32 -lidn2 -lunistring -liconv -lcharset -lbrotlidec -lbrotlicommon -lpthread -lidn2 -lunistring -liconv -lcharset -lssh2 -lgcrypt -lgpg-error -lws2_32 -lgcrypt -lgpg-error -lws2_32 -lws2_32 -lz -lpsl -lunistring -lws2_32 -lidn2 -lunistring -liconv -lcharset -lbcrypt -ladvapi32 -lcrypt32 -lssl -lcrypto -lz -lws2_32 -lgdi32 -lcrypt32 -lcrypto -lz -lws2_32 -lgdi32 -lcrypt32 -lgdi32 -lwldap32 -lbrotlidec -lbrotlidec -lbrotlicommon -lunistring -lws2_32 -lidn2 -lunistring -liconv -lcharset -lbrotlicommon -lpthread -liconv -lcharset -lz -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lbrotlicommon -LD:/rtools44/x86_64-w64-mingw32.static.posix -LD:/rtools44/x86_64-w64-mingw32.static.posix -lz -lws2_32 -lgdi32 -lcrypt32 -lcrypto -lz -lgdi32 -lcrypt32 -lunistring -lidn2 -lunistring -liconv -lcharset -lgcrypt -lgpg-error -lws2_32 -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lgcrypt -lgpg-error -lws2_32 -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lws2_32 -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -liconv -lcharset -lz -lbrotlidec -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lbrotlicommon -lzstd -lssl -LD:/rtools44/x86_64-w64-mingw32.static.posix -lz -lws2_32 -lgdi32 -lcrypt32 -lcrypto -lz -lgdi32 -lcrypt32 -lunistring -liconv -lcharset -lssh2 -lgcrypt -lgpg-error -lws2_32 -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lgcrypt -lgpg-error -lws2_32 -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lgcrypt -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lgpg-error -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lpsl -lunistring -lws2_32 -lidn2 -lunistring -liconv -lcharset -ldf -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -ljpeg -lmfhdf -lportablexdr -lws2_32 -ldf -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -ljpeg -lz -lhdf5 -lm -ldl -lws2_32 -lwsock32 -lz -lsz -lhdf5_hl -lhdf5 -lm -ldl -lws2_32 -lwsock32 -lz -lsz -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lhdf5 -lm -ldl -lws2_32 -lwsock32 -lz -lsz 
configure: creating ./config.status
config.status: creating src/Makefile.common
config.status: creating R/config.R
** libs
  running 'src/Makefile.win' ...
WINDOWS="TRUE" \
        MAKE="make" \
        R_HOME="D:/RCompile/recent/R" \
        R_ARCH="/x64" \
        /bin/sh ../tools/make-recursive.sh
make -f D:/RCompile/recent/R/etc//x64/Makeconf -f D:/RCompile/recent/R/share/make/winshlib.mk -f Makefile.common OBJECTS= attribute.o common.o convert.o dataset.o dimension.o group.o init.o type.o udunits.o variable.o SHLIB=RNetCDF$(SHLIB_EXT) RNetCDF_all
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.9-2\" -DPACKAGE_STRING=\"RNetCDF\ 2.9-2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=1 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=8 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_MPI_H=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1     -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"   -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c attribute.c -o attribute.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.9-2\" -DPACKAGE_STRING=\"RNetCDF\ 2.9-2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=1 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=8 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_MPI_H=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1     -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"   -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c common.c -o common.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.9-2\" -DPACKAGE_STRING=\"RNetCDF\ 2.9-2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=1 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=8 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_MPI_H=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1     -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"   -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c convert.c -o convert.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.9-2\" -DPACKAGE_STRING=\"RNetCDF\ 2.9-2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=1 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=8 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_MPI_H=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1     -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"   -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c dataset.c -o dataset.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.9-2\" -DPACKAGE_STRING=\"RNetCDF\ 2.9-2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=1 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=8 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_MPI_H=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1     -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"   -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c dimension.c -o dimension.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.9-2\" -DPACKAGE_STRING=\"RNetCDF\ 2.9-2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=1 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=8 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_MPI_H=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1     -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"   -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c group.c -o group.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.9-2\" -DPACKAGE_STRING=\"RNetCDF\ 2.9-2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=1 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=8 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_MPI_H=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1     -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"   -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c init.c -o init.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.9-2\" -DPACKAGE_STRING=\"RNetCDF\ 2.9-2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=1 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=8 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_MPI_H=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1     -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"   -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c type.c -o type.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.9-2\" -DPACKAGE_STRING=\"RNetCDF\ 2.9-2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=1 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=8 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_MPI_H=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1     -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"   -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c udunits.c -o udunits.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.9-2\" -DPACKAGE_STRING=\"RNetCDF\ 2.9-2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=1 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=8 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_MPI_H=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1     -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"   -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c variable.c -o variable.o
gcc -shared -s -static-libgcc -o RNetCDF.dll tmp.def attribute.o common.o convert.o dataset.o dimension.o group.o init.o type.o udunits.o variable.o -ludunits2 -lexpat -ladvapi32 -lgdi32 -lcrypt32 -lwldap32 -lwsock32 -lws2_32 -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lnetcdf -lcurl -lxml2 -lz -liconv -lm -lws2_32 -llzma -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -llzma -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lcurl -lidn2 -lunistring -liconv -lcharset -lssh2 -lssh2 -lgcrypt -lgpg-error -lws2_32 -lgcrypt -lgpg-error -lws2_32 -lgcrypt -lgpg-error -lws2_32 -lz -lpsl -lunistring -lws2_32 -lidn2 -lunistring -liconv -lcharset -lbcrypt -ladvapi32 -lcrypt32 -lssl -lcrypto -lssl -lz -lws2_32 -lgdi32 -lcrypt32 -lcrypto -lz -lws2_32 -lgdi32 -lcrypt32 -lgdi32 -lwldap32 -lzstd -lbrotlidec -lbrotlidec -lbrotlicommon -lz -lpsl -lunistring -lws2_32 -lidn2 -lunistring -liconv -lcharset -lbrotlidec -lbrotlicommon -lpthread -lidn2 -lunistring -liconv -lcharset -lssh2 -lgcrypt -lgpg-error -lws2_32 -lgcrypt -lgpg-error -lws2_32 -lws2_32 -lz -lpsl -lunistring -lws2_32 -lidn2 -lunistring -liconv -lcharset -lbcrypt -ladvapi32 -lcrypt32 -lssl -lcrypto -lz -lws2_32 -lgdi32 -lcrypt32 -lcrypto -lz -lws2_32 -lgdi32 -lcrypt32 -lgdi32 -lwldap32 -lbrotlidec -lbrotlidec -lbrotlicommon -lunistring -lws2_32 -lidn2 -lunistring -liconv -lcharset -lbrotlicommon -lpthread -liconv -lcharset -lz -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lbrotlicommon -LD:/rtools44/x86_64-w64-mingw32.static.posix -LD:/rtools44/x86_64-w64-mingw32.static.posix -lz -lws2_32 -lgdi32 -lcrypt32 -lcrypto -lz -lgdi32 -lcrypt32 -lunistring -lidn2 -lunistring -liconv -lcharset -lgcrypt -lgpg-error -lws2_32 -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lgcrypt -lgpg-error -lws2_32 -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lws2_32 -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -liconv -lcharset -lz -lbrotlidec -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lbrotlicommon -lzstd -lssl -LD:/rtools44/x86_64-w64-mingw32.static.posix -lz -lws2_32 -lgdi32 -lcrypt32 -lcrypto -lz -lgdi32 -lcrypt32 -lunistring -liconv -lcharset -lssh2 -lgcrypt -lgpg-error -lws2_32 -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lgcrypt -lgpg-error -lws2_32 -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lgcrypt -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lgpg-error -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lpsl -lunistring -lws2_32 -lidn2 -lunistring -liconv -lcharset -ldf -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -ljpeg -lmfhdf -lportablexdr -lws2_32 -ldf -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -ljpeg -lz -lhdf5 -lm -ldl -lws2_32 -lwsock32 -lz -lsz -lhdf5_hl -lhdf5 -lm -ldl -lws2_32 -lwsock32 -lz -lsz -LD:/rtools44/x86_64-w64-mingw32.static.posix/lib -lhdf5 -lm -ldl -lws2_32 -lwsock32 -lz -lsz -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-RNetCDF/00new/RNetCDF/libs/x64
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'RNetCDF' as RNetCDF_2.9-2.zip
* DONE (RNetCDF)