• using R Under development (unstable) (2024-12-21 r87453 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 13.3.0     GNU Fortran (GCC) 13.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'PSCBS/DESCRIPTION' ... OK
• this is package 'PSCBS' version '0.67.0'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'PSCBS' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s] OK
• checking whether the package can be unloaded cleanly ... [1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s] OK
• checking loading without being on the library search path ... [1s] OK
• checking whether startup messages can be suppressed ... [1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [24s] OK
• checking Rd files ... [2s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors:   as.CBS.DNAcopy.Rd: DNAcopy   as.DNAcopy.CBS.Rd: DNAcopy Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages.
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking sizes of PDF files under 'inst/doc' ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [7s] OK
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [155s] OK   Running 'PairedPSCBS,boot.R' [5s]   Running 'findLargeGaps.R' [1s]   Running 'randomSeed.R' [1s]   Running 'segmentByCBS,calls.R' [0s]   Running 'segmentByCBS,futures.R' [6s]   Running 'segmentByCBS,median.R' [2s]   Running 'segmentByCBS,prune.R' [2s]   Running 'segmentByCBS,report.R' [0s]   Running 'segmentByCBS,shiftTCN.R' [11s]   Running 'segmentByCBS,weights.R' [4s]   Running 'segmentByCBS.R' [69s]   Running 'segmentByNonPairedPSCBS,medianDH.R' [4s]   Running 'segmentByPairedPSCBS,DH.R' [4s]   Running 'segmentByPairedPSCBS,calls.R' [7s]   Running 'segmentByPairedPSCBS,futures.R' [17s]   Running 'segmentByPairedPSCBS,noNormalBAFs.R' [4s]   Running 'segmentByPairedPSCBS,report.R' [0s]   Running 'segmentByPairedPSCBS,seqOfSegmentsByDP.R' [7s]   Running 'segmentByPairedPSCBS.R' [9s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [122s] OK
• checking PDF version of manual ... [25s] OK
• checking HTML version of manual ... [15s] OK
• DONE

Status: 1 NOTE