* using log directory 'd:/Rcompile/CRANpkg/local/4.5/PCPS.Rcheck'
* using R Under development (unstable) (2025-02-14 r87718 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'PCPS/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PCPS' version '1.0.7'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PCPS' can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-windows-x86_64/PCPS-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [3s] OK
* checking whether the package can be loaded with stated dependencies ... [3s] OK
* checking whether the package can be unloaded cleanly ... [3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [3s] OK
* checking whether the namespace can be unloaded cleanly ... [3s] OK
* checking loading without being on the library search path ... [3s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [9s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  define.clade.Rd: makeNodeLabel
  matrix.p.null.Rd: vegdist, matrix.p
  organize.pcps.Rd: organize.syncsa
  pcoa.sig.Rd: vegdist, pcoa, procrustes
  pcps.Rd: vegdist, matrix.p, ordispider, wcmdscale, ordilabel
  pcps.curve.Rd: vegdist, matrix.p
  pcps.sig.Rd: vegdist, matrix.p, mantel, adonis, adonis2, gls, lme,
    rda, procrustes, anova.gls, anova.lme
  self.belonging.Rd: belonging
  wcmdscale.org.Rd: wcmdscale, vegdist
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [5s] OK
* checking PDF version of manual ... [20s] OK
* checking HTML version of manual ... [3s] OK
* DONE
Status: 1 NOTE