• using R Under development (unstable) (2024-11-22 r87365 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 13.3.0     GNU Fortran (GCC) 13.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'PAFit/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'PAFit' version '1.2.10'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'PAFit' can be installed ... OK See the install log for details.
• used C compiler: 'gcc.exe (GCC) 13.3.0'
• used C++ compiler: 'g++.exe (GCC) 13.3.0'
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s] OK
• checking whether the package can be unloaded cleanly ... [2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s] OK
• checking loading without being on the library search path ... [2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [22s] OK
• checking Rd files ... [2s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors:   plot.PAFit_net.Rd: plot.network.default Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages.
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... [0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compiled code ... OK
• checking sizes of PDF files under 'inst/doc' ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [15s] OK
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [70s] OK   Running 'fit_node_no_new_edge.R' [0s]   Running 'loop_generate.R' [0s]   Running 'loop_joint_estimate.R' [0s]   Running 'loop_overall.R' [0s]   Running 'loop_test_Newman_Kong.R' [0s]   Running 'test_GenerateNet_final_padding.R' [2s]   Running 'test_GetStatistics_compress_2.R' [2s]   Running 'test_GetStatistics_undirected.R' [2s]   Running 'test_Newman_Kong.R' [3s]   Running 'test_PAFit_oneshot.R' [6s]   Running 'test_cv_data.R' [0s]   Running 'test_from_igraph.R' [2s]   Running 'test_from_networkDynamic.R' [2s]   Running 'test_generate_net_no_new_node.R' [2s]   Running 'test_graph_from_file.R' [2s]   Running 'test_graph_to_file.R' [2s]   Running 'test_isolated_node_2.R' [4s]   Running 'test_joint_estimate.R' [7s]   Running 'test_only_A.R' [3s]   Running 'test_only_F.R' [3s]   Running 'test_overall.R' [4s]   Running 'test_plot_PAFit_net.R' [7s]   Running 'test_re_generate.R' [5s]   Running 'test_test_linear_PA.R' [3s]   Running 'test_to_igraph.R' [2s]   Running 'test_to_networkDynamic.R' [2s]   Running 'test_true_f.R' [2s]   Running 'test_variance_s.R' [0s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [1s] OK
• checking PDF version of manual ... [24s] OK
• checking HTML version of manual ... [9s] OK
• DONE

Status: 1 NOTE