* installing *source* package 'NetworkInference' ... ** package 'NetworkInference' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 13.3.0' using C++ compiler: 'g++.exe (GCC) 13.3.0' using C++11 make[1]: Entering directory '/d/temp/2024_12_18_01_50_01_11818/RtmpwjPzip/R.INSTALL2030032f12228/NetworkInference/src' gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c NetworkInference_init.c -o NetworkInference_init.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c distributions.cpp -o distributions.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c netinf.cpp -o netinf.o netinf.cpp: In function 'Rcpp::List tree_replacement(int&, int&, edge_map&, Rcpp::List&, Rcpp::List&, Rcpp::List&, std::string&, Rcpp::NumericVector&)': netinf.cpp:199:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 199 | for(int c = 0; c < cascades.size(); c++) { | ~~^~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c netinf_utilities.cpp -o netinf_utilities.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c possible_edges.cpp -o possible_edges.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c spanning_tree.cpp -o spanning_tree.o spanning_tree.cpp: In function 'double edge_score(double&, double&, std::string&, Rcpp::NumericVector&, bool)': spanning_tree.cpp:21:18: warning: 'y' may be used uninitialized [-Wmaybe-uninitialized] 21 | out = log(0.0000000001 * y); | ~~~^~~~~~~~~~~~~~~~~~ spanning_tree.cpp:9:12: note: 'y' was declared here 9 | double y; | ^ g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c vuong_test.cpp -o vuong_test.o g++ -shared -s -static-libgcc -o NetworkInference.dll tmp.def NetworkInference_init.o RcppExports.o distributions.o netinf.o netinf_utilities.o possible_edges.o spanning_tree.o vuong_test.o -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR make[1]: Leaving directory '/d/temp/2024_12_18_01_50_01_11818/RtmpwjPzip/R.INSTALL2030032f12228/NetworkInference/src' make[1]: Entering directory '/d/temp/2024_12_18_01_50_01_11818/RtmpwjPzip/R.INSTALL2030032f12228/NetworkInference/src' make[1]: Leaving directory '/d/temp/2024_12_18_01_50_01_11818/RtmpwjPzip/R.INSTALL2030032f12228/NetworkInference/src' installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-NetworkInference/00new/NetworkInference/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'NetworkInference' as NetworkInference_1.2.4.zip * DONE (NetworkInference)