- using R Under development (unstable) (2025-02-14 r87718 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'MassWateR/DESCRIPTION' ... OK
- this is package 'MassWateR' version '2.1.5'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'MassWateR' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s] OK
- checking whether the package can be unloaded cleanly ... [1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s] OK
- checking loading without being on the library search path ... [1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [9s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [30s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [41s] ERROR
Running 'testthat.R' [41s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(MassWateR)
>
> test_check("MassWateR")
Attaching package: 'lubridate'
The following objects are masked from 'package:base':
date, intersect, setdiff, union
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Running checks on data quality objectives for accuracy...
Running checks on data quality objectives for accuracy...
Checking column names... OK
Running checks on data quality objectives for accuracy...
Checking column names... OK
Checking all required columns are present... OK
Running checks on data quality objectives for accuracy...
Checking column names... OK
Checking all required columns are present... OK
Checking column types... OK
Checking no "na" in Value Range... OK
Checking for text other than <=, ≤, <, >=, ≥, >, ±, %, AQL, BQL, log, or all... OK
Checking overlaps in Value Range... OK
Checking gaps in Value Range... OK
Checking Parameter formats... OK
Checking for missing entries for unit (uom)... OK
Checking if more than one unit (uom) per Parameter... OK
Checking acceptable units (uom) for each entry in Parameter... OK
Checking empty columns... WARNING
All checks passed (1 WARNING(s))!
Running checks on data quality objectives for accuracy...
Checking column names... OK
Checking all required columns are present... OK
Checking column types... OK
Checking no "na" in Value Range... OK
Running checks on data quality objectives for accuracy...
Checking column names... OK
Checking all required columns are present... OK
Checking column types... OK
Checking no "na" in Value Range... OK
Checking for text other than <=, ≤, <, >=, ≥, >, ±, %, AQL, BQL, log, or all... OK
Running checks on data quality objectives for accuracy...
Checking column names... OK
Checking all required columns are present... OK
Checking column types... OK
Checking no "na" in Value Range... OK
Checking for text other than <=, ≤, <, >=, ≥, >, ±, %, AQL, BQL, log, or all... OK
Checking overlaps in Value Range... OK
Checking gaps in Value Range... WARNING
Checking Parameter formats... OK
Checking for missing entries for unit (uom)... OK
Checking if more than one unit (uom) per Parameter... OK
Checking acceptable units (uom) for each entry in Parameter... OK
Checking empty columns... OK
All checks passed (1 WARNING(s))!
Running checks on data quality objectives for accuracy...
Checking column names... OK
Checking all required columns are present... OK
Checking column types... OK
Checking no "na" in Value Range... OK
Checking for text other than <=, ≤, <, >=, ≥, >, ±, %, AQL, BQL, log, or all... OK
Checking overlaps in Value Range... OK
Checking gaps in Value Range... OK
Checking Parameter formats... OK
Running checks on data quality objectives for accuracy...
Checking column names... OK
Checking all required columns are present... OK
Checking column types... OK
Checking no "na" in Value Range... OK
Checking for text other than <=, ≤, <, >=, ≥, >, ±, %, AQL, BQL, log, or all... OK
Checking overlaps in Value Range... OK
Checking gaps in Value Range... OK
Checking Parameter formats... OK
Checking for missing entries for unit (uom)... OK
Running checks on data quality objectives for accuracy...
Checking column names... OK
Checking all required columns are present... OK
Checking column types... OK
Checking no "na" in Value Range... OK
Checking for text other than <=, ≤, <, >=, ≥, >, ±, %, AQL, BQL, log, or all... OK
Checking overlaps in Value Range... OK
Checking gaps in Value Range... WARNING
Running checks on data quality objectives for accuracy...
Checking column names... OK
Checking all required columns are present... OK
Checking column types... OK
Checking no "na" in Value Range... OK
Checking for text other than <=, ≤, <, >=, ≥, >, ±, %, AQL, BQL, log, or all... OK
Checking overlaps in Value Range... OK
Checking gaps in Value Range... OK
Checking Parameter formats... OK
Checking for missing entries for unit (uom)... OK
Checking if more than one unit (uom) per Parameter... OK
Running checks on data quality objectives for accuracy...
Checking column names... OK
Checking all required columns are present... OK
Checking column types... OK
Checking no "na" in Value Range... OK
Checking for text other than <=, ≤, <, >=, ≥, >, ±, %, AQL, BQL, log, or all... OK
Checking overlaps in Value Range... OK
Checking gaps in Value Range... OK
Checking Parameter formats... OK
Checking for missing entries for unit (uom)... OK
Checking if more than one unit (uom) per Parameter... OK
Checking acceptable units (uom) for each entry in Parameter... OK
Checking empty columns... WARNING
All checks passed (1 WARNING(s))!
Running checks on data quality objectives for accuracy...
Checking column names... OK
Checking all required columns are present... OK
Checking column types... OK
Running checks on data quality objectives for frequency and completeness...
Running checks on data quality objectives for frequency and completeness...
Checking column names... OK
Running checks on data quality objectives for frequency and completeness...
Checking column names... OK
Checking all required columns are present... OK
Running checks on data quality objectives for frequency and completeness...
Checking column names... OK
Checking all required columns are present... OK
Checking for non-numeric values... OK
Running checks on data quality objectives for frequency and completeness...
Checking column names... OK
Checking all required columns are present... OK
Checking for non-numeric values... OK
Checking for values outside of 0 and 100... OK
Running checks on data quality objectives for frequency and completeness...
Checking column names... OK
Checking all required columns are present... OK
Checking for non-numeric values... OK
Checking for values outside of 0 and 100... OK
Checking Parameter formats... OK
Checking empty columns... WARNING
All checks passed (1 WARNING(s))!
Running checks on results data...
Running checks on results data...
Checking column names... OK
Running checks on results data...
Checking column names... OK
Checking all required columns are present... OK
Running checks on results data...
Checking column names... OK
Checking all required columns are present... OK
Checking valid Activity Types... OK
Running checks on results data...
Checking column names... OK
Checking all required columns are present... OK
Checking valid Activity Types... OK
Checking Activity Start Date formats... OK
Running checks on results data...
Checking column names... OK
Checking all required columns are present... OK
Checking valid Activity Types... OK
Checking Activity Start Date formats... OK
Checking depth data present... OK
Running checks on results data...
Checking column names... OK
Checking all required columns are present... OK
Checking valid Activity Types... OK
Checking Activity Start Date formats... OK
Checking depth data present... OK
Checking for non-numeric values in Activity Depth/Height Measure... OK
Running checks on results data...
Checking column names... OK
Checking all required columns are present... OK
Checking valid Activity Types... OK
Checking Activity Start Date formats... OK
Checking depth data present... OK
Checking for non-numeric values in Activity Depth/Height Measure... OK
Checking Activity Depth/Height Unit... OK
Checking Activity Relative Depth Name formats... OK
Checking values in Activity Depth/Height Measure > 1 m / 3.3 ft... WARNING
Checking Characteristic Name formats... OK
Checking Result Values... OK
Checking for non-numeric values in Quantitation Limit... OK
Checking QC Reference Values... OK
Checking for missing entries for Result Unit... OK
Checking if more than one unit per Characteristic Name... OK
Checking acceptable units for each entry in Characteristic Name... OK
All checks passed (1 WARNING(s))!
Running checks on results data...
Checking column names... OK
Checking all required columns are present... OK
Checking valid Activity Types... OK
Checking Activity Start Date formats... OK
Checking depth data present... OK
Checking for non-numeric values in Activity Depth/Height Measure... OK
Checking Activity Depth/Height Unit... OK
Checking Activity Relative Depth Name formats... WARNING
Checking values in Activity Depth/Height Measure > 1 m / 3.3 ft... OK
Checking Characteristic Name formats... OK
Checking Result Values... OK
Checking for non-numeric values in Quantitation Limit... OK
Checking QC Reference Values... OK
Checking for missing entries for Result Unit... OK
Checking if more than one unit per Characteristic Name... OK
Checking acceptable units for each entry in Characteristic Name... OK
All checks passed (1 WARNING(s))!
Running checks on results data...
Checking column names... OK
Checking all required columns are present... OK
Checking valid Activity Types... OK
Checking Activity Start Date formats... OK
Checking depth data present... OK
Checking for non-numeric values in Activity Depth/Height Measure... OK
Checking Activity Depth/Height Unit... OK
Checking Activity Relative Depth Name formats... OK
Checking values in Activity Depth/Height Measure > 1 m / 3.3 ft... OK
Checking Characteristic Name formats... WARNING
Checking Result Values... OK
Checking for non-numeric values in Quantitation Limit... OK
Checking QC Reference Values... OK
Checking for missing entries for Result Unit... OK
Checking if more than one unit per Characteristic Name... OK
Checking acceptable units for each entry in Characteristic Name... OK
All checks passed (1 WARNING(s))!
Running checks on results data...
Checking column names... OK
Checking all required columns are present... OK
Checking valid Activity Types... OK
Checking Activity Start Date formats... OK
Checking depth data present... OK
Checking for non-numeric values in Activity Depth/Height Measure... OK
Checking Activity Depth/Height Unit... OK
Checking Activity Relative Depth Name formats... OK
Checking values in Activity Depth/Height Measure > 1 m / 3.3 ft... OK
Checking Characteristic Name formats... OK
Checking Result Values... OK
Running checks on results data...
Checking column names... OK
Checking all required columns are present... OK
Checking valid Activity Types... OK
Checking Activity Start Date formats... OK
Checking depth data present... OK
Checking for non-numeric values in Activity Depth/Height Measure... OK
Checking Activity Depth/Height Unit... OK
Checking Activity Relative Depth Name formats... OK
Checking values in Activity Depth/Height Measure > 1 m / 3.3 ft... OK
Checking Characteristic Name formats... OK
Running checks on results data...
Checking column names... OK
Checking all required columns are present... OK
Checking valid Activity Types... OK
Checking Activity Start Date formats... OK
Checking depth data present... OK
Checking for non-numeric values in Activity Depth/Height Measure... OK
Checking Activity Depth/Height Unit... OK
Checking Activity Relative Depth Name formats... OK
Checking values in Activity Depth/Height Measure > 1 m / 3.3 ft... OK
Checking Characteristic Name formats... OK
Checking Result Values... OK
Checking for non-numeric values in Quantitation Limit... OK
Running checks on results data...
Checking column names... OK
Checking all required columns are present... OK
Checking valid Activity Types... OK
Checking Activity Start Date formats... OK
Checking depth data present... OK
Checking for non-numeric values in Activity Depth/Height Measure... OK
Checking Activity Depth/Height Unit... OK
Checking Activity Relative Depth Name formats... OK
Checking values in Activity Depth/Height Measure > 1 m / 3.3 ft... OK
Checking Characteristic Name formats... OK
Checking Result Values... OK
Checking for non-numeric values in Quantitation Limit... OK
Checking QC Reference Values... OK
Running checks on results data...
Checking column names... OK
Checking all required columns are present... OK
Checking valid Activity Types... OK
Checking Activity Start Date formats... OK
Checking depth data present... OK
Checking for non-numeric values in Activity Depth/Height Measure... OK
Checking Activity Depth/Height Unit... OK
Checking Activity Relative Depth Name formats... OK
Checking values in Activity Depth/Height Measure > 1 m / 3.3 ft... OK
Checking Characteristic Name formats... OK
Checking Result Values... OK
Checking for non-numeric values in Quantitation Limit... OK
Checking QC Reference Values... OK
Checking for missing entries for Result Unit... OK
Running checks on results data...
Checking column names... OK
Checking all required columns are present... OK
Checking valid Activity Types... OK
Checking Activity Start Date formats... OK
Checking depth data present... OK
Checking for non-numeric values in Activity Depth/Height Measure... OK
Checking Activity Depth/Height Unit... OK
Checking Activity Relative Depth Name formats... OK
Checking values in Activity Depth/Height Measure > 1 m / 3.3 ft... OK
Checking Characteristic Name formats... OK
Checking Result Values... OK
Checking for non-numeric values in Quantitation Limit... OK
Checking QC Reference Values... OK
Checking for missing entries for Result Unit... OK
Checking if more than one unit per Characteristic Name... OK
Running checks on results data...
Checking column names... OK
Checking all required columns are present... OK
Checking valid Activity Types... OK
Checking Activity Start Date formats... OK
Checking depth data present... OK
Checking for non-numeric values in Activity Depth/Height Measure... OK
Checking Activity Depth/Height Unit... OK
Checking Activity Relative Depth Name formats... OK
Checking values in Activity Depth/Height Measure > 1 m / 3.3 ft... OK
Checking Characteristic Name formats... OK
Checking Result Values... OK
Checking for non-numeric values in Quantitation Limit... OK
Checking QC Reference Values... OK
Checking for missing entries for Result Unit... OK
Checking if more than one unit per Characteristic Name... OK
Checking acceptable units for each entry in Characteristic Name... OK
Running checks on site metadata...
Running checks on site metadata...
Checking column names... OK
Running checks on site metadata...
Checking column names... OK
Checking all required columns are present... OK
Running checks on site metadata...
Checking column names... OK
Checking all required columns are present... OK
Checking for missing latitude or longitude values... OK
Running checks on site metadata...
Checking column names... OK
Checking all required columns are present... OK
Checking for missing latitude or longitude values... OK
Checking for non-numeric values in latitude... OK
Running checks on site metadata...
Checking column names... OK
Checking all required columns are present... OK
Checking for missing latitude or longitude values... OK
Checking for non-numeric values in latitude... OK
Checking for non-numeric values in longitude... OK
Running checks on site metadata...
Checking column names... OK
Checking all required columns are present... OK
Checking for missing latitude or longitude values... OK
Checking for non-numeric values in latitude... OK
Checking for non-numeric values in longitude... OK
Checking for positive values in longitude... OK
Running checks on WQX metadata...
Running checks on WQX metadata...
Checking column names... OK
Running checks on WQX metadata...
Checking column names... OK
Checking all required columns are present... OK
Running checks on WQX metadata...
Checking column names... OK
Checking all required columns are present... OK
Checking unique parameters... OK
Checking Parameter formats... WARNING
All checks passed (1 WARNING(s))!
Running checks on data quality objectives for frequency and completeness...
Checking column names... OK
Checking all required columns are present... OK
Checking for non-numeric values... OK
Checking for values outside of 0 and 100... OK
Checking Parameter formats... OK
Checking empty columns... OK
All checks passed!
Running checks on data quality objectives for accuracy...
Checking column names... OK
Checking all required columns are present... OK
Checking column types... OK
Checking no "na" in Value Range... OK
Checking for text other than <=, ≤, <, >=, ≥, >, ±, %, AQL, BQL, log, or all... OK
Checking overlaps in Value Range... OK
Checking gaps in Value Range... OK
Checking Parameter formats... OK
Checking for missing entries for unit (uom)... OK
Checking if more than one unit (uom) per Parameter... OK
Checking acceptable units (uom) for each entry in Parameter... OK
Checking empty columns... OK
All checks passed!
Running checks on data quality objectives for frequency and completeness...
Checking column names... OK
Checking all required columns are present... OK
Checking for non-numeric values... OK
Checking for values outside of 0 and 100... OK
Checking Parameter formats... OK
Checking empty columns... OK
All checks passed!
Running checks on results data...
Checking column names... OK
Checking all required columns are present... OK
Checking valid Activity Types... OK
Checking Activity Start Date formats... OK
Checking depth data present... OK
Checking for non-numeric values in Activity Depth/Height Measure... OK
Checking Activity Depth/Height Unit... OK
Checking Activity Relative Depth Name formats... OK
Checking values in Activity Depth/Height Measure > 1 m / 3.3 ft... OK
Checking Characteristic Name formats... OK
Checking Result Values... OK
Checking for non-numeric values in Quantitation Limit... OK
Checking QC Reference Values... OK
Checking for missing entries for Result Unit... OK
Checking if more than one unit per Characteristic Name... OK
Checking acceptable units for each entry in Characteristic Name... OK
All checks passed!
Running checks on results data...
Checking column names... OK
Checking all required columns are present... OK
Checking valid Activity Types... OK
Checking Activity Start Date formats... OK
Checking depth data present... OK
Checking for non-numeric values in Activity Depth/Height Measure... OK
Checking Activity Depth/Height Unit... OK
Checking Activity Relative Depth Name formats... OK
Checking values in Activity Depth/Height Measure > 1 m / 3.3 ft... OK
Checking Characteristic Name formats... OK
Checking Result Values... OK
Checking for non-numeric values in Quantitation Limit... OK
Checking QC Reference Values... OK
Checking for missing entries for Result Unit... OK
Checking if more than one unit per Characteristic Name... OK
Checking acceptable units for each entry in Characteristic Name... OK
All checks passed!
Running checks on site metadata...
Checking column names... OK
Checking all required columns are present... OK
Checking for missing latitude or longitude values... OK
Checking for non-numeric values in latitude... OK
Checking for non-numeric values in longitude... OK
Checking for positive values in longitude... OK
Checking for missing entries for Monitoring Location ID... OK
All checks passed!
Running checks on WQX metadata...
Checking column names... OK
Checking all required columns are present... OK
Checking unique parameters... OK
Checking Parameter formats... OK
All checks passed!
Running checks on WQX metadata...
Checking column names... OK
Checking all required columns are present... OK
Checking unique parameters... OK
Checking Parameter formats... OK
All checks passed!
Timeout was reached [raw.githubusercontent.com]: Operation timed out after 10000 milliseconds with 2682944 out of 4591861 bytes received
[ FAIL 1 | WARN 49 | SKIP 5 | PASS 188 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-anlzMWRmap.R:2:3', 'test-anlzMWRmap.R:8:3',
'test-anlzMWRmap.R:14:3', 'test-anlzMWRmap.R:24:3', 'test-anlzMWRmap.R:30:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-utilMWRhttpgrace.R:8:3'): Checking sf output ─────────────────
`resp` is not an S3 object
[ FAIL 1 | WARN 49 | SKIP 5 | PASS 188 ]
Error: Test failures
Execution halted
- checking PDF version of manual ... [22s] OK
- checking HTML version of manual ... [9s] OK
- DONE
Status: 1 ERROR