* using log directory 'd:/Rcompile/CRANpkg/local/4.5/MapGAM.Rcheck'
* using R Under development (unstable) (2025-02-14 r87718 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'MapGAM/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MapGAM' version '1.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MapGAM' can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-windows-x86_64/MapGAM-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [3s] OK
* checking whether the package can be loaded with stated dependencies ... [2s] OK
* checking whether the package can be unloaded cleanly ... [3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [3s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s] OK
* checking Rd files ... [1s] NOTE
checkRd: (-1) MapGAM-package.Rd:28: Lost braces
    28 | Bai L, Gillen DL, Bartell SM, Vieira VM. \doi{10.32614/RJ-2020-001}{Mapping smoothed spatial effect estimates from individual-level data:  MapGAM}. The R Journal 2020, 12:32-48. 
       |                                                                    ^
checkRd: (-1) MapGAM-package.Rd:32: Lost braces
    32 | Kelsall J, Diggle P. \doi{10.1111/1467-9876.00128}{Spatial variation in risk of disease: a nonparametric binary regression approach}. J Roy Stat Soc C-App 1998, 47:559-573.    
       |                                                   ^
checkRd: (-1) MapGAM-package.Rd:34: Lost braces
    34 | Tang IW, Bartell SM, Vieira VM. \doi{10.1016/j.sste.2023.100584}{Unmatched Spatially Stratified Controls: A simulation study examining efficiency and precision using spatially-diverse controls and generalized additive models}. Spatial and Spatio-temporal Epidemiology 2023, 45:100584.
       |                                                                 ^
checkRd: (-1) MapGAM-package.Rd:36: Lost braces
    36 | Vieira V, Webster T, Weinberg J, Aschengrau A, Ozonoff D. \doi{10.1186/1476-069X-4-11}{Spatial analysis of lung, colorectal, and breast cancer on Cape Cod: An application of generalized additive models to case-control data}. Environmental Health 2005, 4:11. 
       |                                                                                       ^
checkRd: (-1) MapGAM-package.Rd:38: Lost braces
    38 | Webster T, Vieira V, Weinberg J, Aschengrau A. \doi{10.1186/1476-072X-5-26}{Method for mapping population-based case-control studies using Generalized Additive Models}. International Journal of Health Geographics 2006, 5:26.
       |                                                                            ^
checkRd: (-1) MapGAM-package.Rd:40: Lost braces
    40 | Young RL, Weinberg J, Vieira V, Ozonoff A, Webster TF. \doi{10.1186/1476-072X-9-37}{A power comparison of generalized additive models and the spatial scan statistic in a case-control setting}. International Journal of Health Geographics 2010, 9:37.
       |                                                                                    ^
checkRd: (-1) modgam.Rd:108: Lost braces
   108 | Bai L, Gillen DL, Bartell SM, Vieira VM. \doi{10.32614/RJ-2020-001}{Mapping smoothed spatial effect estimates from individual-level data:  MapGAM}. The R Journal 2020, 12:32-48. 
       |                                                                    ^
checkRd: (-1) modgam.Rd:112-113: Lost braces
   112 | Kelsall J, Diggle P. \doi{10.1111/1467-9876.00128}{Spatial variation in risk of disease: a nonparametric binary 
       |                                                   ^
checkRd: (-1) modgam.Rd:115: Lost braces
   115 | Vieira V, Webster T, Weinberg J, Aschengrau A, Ozonoff D. \doi{10.1186/1476-069X-4-11}{Spatial analysis of lung, colorectal, and breast cancer on Cape Cod: An application of generalized additive models to case-control data}. Environmental Health 2005, 4:11. 
       |                                                                                       ^
checkRd: (-1) modgam.Rd:117: Lost braces
   117 | Webster T, Vieira V, Weinberg J, Aschengrau A. \doi{10.1186/1476-072X-5-26}{Method for mapping population-based case-control studies using Generalized Additive Models}. International Journal of Health Geographics 2006, 5:26.
       |                                                                            ^
checkRd: (-1) modgam.Rd:119: Lost braces
   119 | Young RL, Weinberg J, Vieira V, Ozonoff A, Webster TF. \doi{10.1186/1476-072X-9-37}{A power comparison of generalized additive models and the spatial scan statistic in a case-control setting}. International Journal of Health Geographics 2010, 9:37.
       |                                                                                    ^
checkRd: (-1) sampcont.Rd:74: Lost braces
    74 | Tang IW, Bartell SM, Vieira VM. \doi{10.1016/j.sste.2023.100584}{Unmatched Spatially Stratified Controls: A simulation study examining efficiency and precision using spatially-diverse controls and generalized additive models}. Spatial and Spatio-temporal Epidemiology 2023, 45:100584.
       |                                                                 ^
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  modgam.Rd: gam
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [1s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [10s] OK
* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... [6s] OK
* DONE
Status: 2 NOTEs