* using log directory 'd:/Rcompile/CRANpkg/local/4.5/MMLR.Rcheck'
* using R Under development (unstable) (2025-02-14 r87718 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'MMLR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MMLR' version '0.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MMLR' can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-windows-x86_64/MMLR-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s] OK
* checking whether the package can be unloaded cleanly ... [0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s] OK
* checking loading without being on the library search path ... [0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [3s] OK
* checking Rd files ... [1s] NOTE
checkRd: (-1) Aver_soj_time.Rd:25: Lost braces; missing escapes or markup?
    25 | Matrix Q is so-called Generator matrix:  \eqn{Q=\lambda-\Lambda, where \lambda} is matrix with known transition rates from state $s_{i}$ to state $s_{j}$,
       |                                                                                                                                     ^
checkRd: (-1) Aver_soj_time.Rd:25: Lost braces; missing escapes or markup?
    25 | Matrix Q is so-called Generator matrix:  \eqn{Q=\lambda-\Lambda, where \lambda} is matrix with known transition rates from state $s_{i}$ to state $s_{j}$,
       |                                                                                                                                                      ^
checkRd: (-1) B_est.Rd:34: Lost braces; missing escapes or markup?
    34 | where vector of average sojourn times in each state $t_{i}$ is calculated using function Aver_soj_time, $t_{i}$ is an element of tGiven, $x_{i}$ is a vector of matrix X.
       |                                                        ^
checkRd: (-1) B_est.Rd:34: Lost braces; missing escapes or markup?
    34 | where vector of average sojourn times in each state $t_{i}$ is calculated using function Aver_soj_time, $t_{i}$ is an element of tGiven, $x_{i}$ is a vector of matrix X.
       |                                                                                                            ^
checkRd: (-1) B_est.Rd:34: Lost braces; missing escapes or markup?
    34 | where vector of average sojourn times in each state $t_{i}$ is calculated using function Aver_soj_time, $t_{i}$ is an element of tGiven, $x_{i}$ is a vector of matrix X.
       |                                                                                                                                             ^
checkRd: (-1) VarY.Rd:31: Lost braces; missing escapes or markup?
    31 | where vector of average sojourn times in each state $t_{i}$ is calculated using function Aver_soj_time
       |                                                        ^
checkRd: (-1) Ysimulation.Rd:30: Lost braces; missing escapes or markup?
    30 | The i-th response $Y_{i}$ is defined by the following formula: $Y_{i}(t)=x_{i}\eqn{\beta} + Z_{i} sqrt{t}, i=1,...,n.$
       |                      ^
checkRd: (-1) Ysimulation.Rd:30: Lost braces; missing escapes or markup?
    30 | The i-th response $Y_{i}$ is defined by the following formula: $Y_{i}(t)=x_{i}\eqn{\beta} + Z_{i} sqrt{t}, i=1,...,n.$
       |                                                                   ^
checkRd: (-1) Ysimulation.Rd:30: Lost braces; missing escapes or markup?
    30 | The i-th response $Y_{i}$ is defined by the following formula: $Y_{i}(t)=x_{i}\eqn{\beta} + Z_{i} sqrt{t}, i=1,...,n.$
       |                                                                            ^
checkRd: (-1) Ysimulation.Rd:30: Lost braces; missing escapes or markup?
    30 | The i-th response $Y_{i}$ is defined by the following formula: $Y_{i}(t)=x_{i}\eqn{\beta} + Z_{i} sqrt{t}, i=1,...,n.$
       |                                                                                               ^
checkRd: (-1) Ysimulation.Rd:30: Lost braces
    30 | The i-th response $Y_{i}$ is defined by the following formula: $Y_{i}(t)=x_{i}\eqn{\beta} + Z_{i} sqrt{t}, i=1,...,n.$
       |                                                                                                       ^
checkRd: (-1) randomizeTau.Rd:29: Lost braces; missing escapes or markup?
    29 | Initial values of observation times are multiplied by a random value ($tau_{i}$ x k x rnd(0, 1)). All times are independent and time of ith observation has uniform distribution on (0, k$tau_{i}$).
       |                                                                            ^
checkRd: (-1) randomizeTau.Rd:29: Lost braces; missing escapes or markup?
    29 | Initial values of observation times are multiplied by a random value ($tau_{i}$ x k x rnd(0, 1)). All times are independent and time of ith observation has uniform distribution on (0, k$tau_{i}$).
       |                                                                                                                                                                                               ^
checkRd: (-1) randomizeX.Rd:41: Lost braces; missing escapes or markup?
    41 | Random perturbations are added to the initial values of matrix X elements ($X_{i,j}$ + rnd), which are distributed according to a chosen distribution (possible alternatives: uniform, exponential and gamma distribution).
       |                                                                               ^
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking LazyData ... INFO
  'LazyData' is specified without a 'data' directory
* checking examples ... [2s] OK
* checking PDF version of manual ... [20s] OK
* checking HTML version of manual ... [2s] OK
* DONE
Status: 1 NOTE