* using log directory ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.5/diseasystore.Rcheck’
* using R Under development (unstable) (2025-01-24 r87627)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.3.1
* using session charset: UTF-8
* checking for file ‘diseasystore/DESCRIPTION’ ... OK
* this is package ‘diseasystore’ version ‘0.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘diseasystore’ can be installed ... [10s/13s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-macos-x86_64/diseasystore-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘0_R6_utils.R’ ‘0_linters.R’ ‘2_FeatureHandler.R’
    ‘3_feature_store_helpers.R’ ‘DiseasystoreBase.R’
    ‘DiseasystoreEcdcRespiratoryViruses.R’ ‘DiseasystoreGoogleCovid19.R’
    ‘DiseasystoreSimulist.R’ ‘drop_diseasystore.R’
    ‘source_conn_helpers.R’ ‘test_diseasystore.R’ ‘truncate_interlace.R’
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/2s] OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [4s/7s] OK
* checking Rd files ... [0s/1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [2s/6s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [209s/304s] OK
  Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [209s/303s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [60s/81s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘benchmarks.Rmd’ using rmarkdown
fatal: not a git repository (or any of the parent directories): .git
--- finished re-building ‘benchmarks.Rmd’

--- re-building ‘diseasystore-ecdc-respiratory-viruses.Rmd’ using rmarkdown
--- finished re-building ‘diseasystore-ecdc-respiratory-viruses.Rmd’

--- re-building ‘diseasystore-google-covid-19.Rmd’ using rmarkdown
--- finished re-building ‘diseasystore-google-covid-19.Rmd’

--- re-building ‘diseasystore.Rmd’ using rmarkdown
--- finished re-building ‘diseasystore.Rmd’

--- re-building ‘extending-diseasystore-example.Rmd’ using rmarkdown

Quitting from lines 537-540 [stratifications_positive_sex_age_plot] (extending-diseasystore-example.Rmd)
Error: processing vignette 'extending-diseasystore-example.Rmd' failed with diagnostics:
Faceting variables must have at least one value.
--- failed re-building ‘extending-diseasystore-example.Rmd’

--- re-building ‘extending-diseasystore.Rmd’ using rmarkdown
--- finished re-building ‘extending-diseasystore.Rmd’

SUMMARY: processing the following file failed:
  ‘extending-diseasystore-example.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [6s/8s] OK
* DONE
Status: 1 ERROR, 1 NOTE
* using check arguments '--no-clean-on-error '

* elapsed time (check, wall clock): 7:49