* using log directory ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.5/aroma.affymetrix.Rcheck’
* using R Under development (unstable) (2025-01-24 r87627)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.3.1
* using session charset: UTF-8
* checking for file ‘aroma.affymetrix/DESCRIPTION’ ... OK
* this is package ‘aroma.affymetrix’ version ‘3.2.2’
* checking package namespace information ... OK
* checking package dependencies ... INFO
Packages suggested but not available for checking:
  'affxparser', 'oligo', 'oligoClasses', 'pdInfoBuilder',
  'AffymetrixDataTestFiles'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘aroma.affymetrix’ can be installed ... [31s/50s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-macos-x86_64/aroma.affymetrix-00install.html' for details.
* checking installed package size ... INFO
  installed size is  6.2Mb
  sub-directories of 1Mb or more:
    R             3.1Mb
    help          1.2Mb
    testScripts   1.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [52s/92s] OK
* checking Rd files ... [2s/3s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Packages unavailable to check Rd xrefs: ‘affxparser’, ‘oligo’, ‘oligoClasses’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [1s/1s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [5s/8s] OK
  Running ‘001.setupExampleData,annotationData.R’ [1s/1s]
  Running ‘002.setupExampleData,rawData.R’ [1s/1s]
  Running ‘AffymetrixCdfFile.R’ [1s/1s]
  Running ‘AffymetrixCelFile.R’ [1s/2s]
  Running ‘AffymetrixCelSet.R’ [1s/2s]
* checking PDF version of manual ... [20s/30s] OK
* DONE
Status: OK
* using check arguments '--no-clean-on-error '

* elapsed time (check, wall clock): 4:10