* installing *source* package ‘PerMallows’ ...
** this is package ‘PerMallows’ version ‘1.14’
** package ‘PerMallows’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c Cayley.cpp -o Cayley.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c Ferrers_diagram.cpp -o Ferrers_diagram.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c Generic.cpp -o Generic.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c Hamming.cpp -o Hamming.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c Kendall.cpp -o Kendall.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c Newton_raphson.cpp -o Newton_raphson.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c Ulam.cpp -o Ulam.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c Ulam_disk.cpp -o Ulam_disk.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c Wrapper.cpp -o Wrapper.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c main.cpp -o main.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c test.cpp -o test.o
Ulam.cpp:324:13: warning: variable 'distance_acum' set but not used [-Wunused-but-set-variable]
double distance_acum = 0, rand_distance = 0;
^
Ulam_disk.cpp:67:5: error: use of undeclared identifier 'error'
error("Error: Insufficient memory for vector.");
^
Ulam_disk.cpp:110:9: error: use of undeclared identifier 'error'
error("Error: Failed to open file for writing: %s", str_permus_per_shape_n_d);
^
Ulam_disk.cpp:161:5: error: use of undeclared identifier 'error'
error("Error: Failed to open file for writing: %s", str_permus_per_dist);
^
Wrapper.cpp:132:24: error: use of undeclared identifier 'allocMatrix'; did you mean 'Rf_allocMatrix'?
PROTECT(Rval = allocMatrix(REALSXP, m, n));
^~~~~~~~~~~
Rf_allocMatrix
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:388:31: note: expanded from macro 'PROTECT'
#define PROTECT(s) Rf_protect(s)
^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:504:6: note: 'Rf_allocMatrix' declared here
SEXP Rf_allocMatrix(SEXPTYPE, int, int);
^
Wrapper.cpp:156:24: error: use of undeclared identifier 'allocMatrix'; did you mean 'Rf_allocMatrix'?
PROTECT(Rval = allocMatrix(REALSXP, m, n));
^~~~~~~~~~~
Rf_allocMatrix
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:388:31: note: expanded from macro 'PROTECT'
#define PROTECT(s) Rf_protect(s)
^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:504:6: note: 'Rf_allocMatrix' declared here
SEXP Rf_allocMatrix(SEXPTYPE, int, int);
^
Wrapper.cpp:196:24: error: use of undeclared identifier 'allocMatrix'; did you mean 'Rf_allocMatrix'?
PROTECT(Rval = allocMatrix(REALSXP, m, n));
^~~~~~~~~~~
Rf_allocMatrix
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:388:31: note: expanded from macro 'PROTECT'
#define PROTECT(s) Rf_protect(s)
^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:504:6: note: 'Rf_allocMatrix' declared here
SEXP Rf_allocMatrix(SEXPTYPE, int, int);
^
Wrapper.cpp:217:21: error: use of undeclared identifier 'getAttrib'; did you mean 'Rf_getAttrib'?
SEXP Rdim = getAttrib(samples, R_DimSymbol);
^~~~~~~~~
Rf_getAttrib
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:538:6: note: 'Rf_getAttrib' declared here
SEXP Rf_getAttrib(SEXP, SEXP);
^
Wrapper.cpp:266:24: error: use of undeclared identifier 'allocVector'; did you mean 'Rf_allocVector'?
PROTECT(Rval = allocVector(INTSXP, 1));
^~~~~~~~~~~
Rf_allocVector
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:388:31: note: expanded from macro 'PROTECT'
#define PROTECT(s) Rf_protect(s)
^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1078:10: note: 'Rf_allocVector' declared here
SEXP Rf_allocVector(SEXPTYPE, R_xlen_t);
^
Wrapper.cpp:289:24: error: use of undeclared identifier 'allocVector'; did you mean 'Rf_allocVector'?
PROTECT(Rval = allocVector(REALSXP, n));
^~~~~~~~~~~
Rf_allocVector
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:388:31: note: expanded from macro 'PROTECT'
#define PROTECT(s) Rf_protect(s)
^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1078:10: note: 'Rf_allocVector' declared here
SEXP Rf_allocVector(SEXPTYPE, R_xlen_t);
^
Wrapper.cpp:309:24: error: use of undeclared identifier 'allocVector'; did you mean 'Rf_allocVector'?
PROTECT(Rval = allocVector(INTSXP, 1));
^~~~~~~~~~~
Rf_allocVector
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:388:31: note: expanded from macro 'PROTECT'
#define PROTECT(s) Rf_protect(s)
^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1078:10: note: 'Rf_allocVector' declared here
SEXP Rf_allocVector(SEXPTYPE, R_xlen_t);
^
Wrapper.cpp:344:24: error: use of undeclared identifier 'allocVector'; did you mean 'Rf_allocVector'?
PROTECT(Rval = allocVector(REALSXP, 1));//vector len 1
^~~~~~~~~~~
Rf_allocVector
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:388:31: note: expanded from macro 'PROTECT'
#define PROTECT(s) Rf_protect(s)
^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1078:10: note: 'Rf_allocVector' declared here
SEXP Rf_allocVector(SEXPTYPE, R_xlen_t);
^
3 errors generated.
make: *** [Ulam_disk.o] Error 1
make: *** Waiting for unfinished jobs....
8 errors generated.
make: *** [Wrapper.o] Error 1
1 warning generated.
ERROR: compilation failed for package ‘PerMallows’
* removing ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.5/PerMallows.Rcheck/PerMallows’