* installing *source* package ‘scorematchingad’ ...
** package ‘scorematchingad’ successfully unpacked and MD5 sums checked
** using staged installation
checking for cmake... /Applications/CMake.app/Contents/bin/cmake
configure: Running CMake...
-- The C compiler identification is AppleClang 14.0.0.14000029
-- The CXX compiler identification is AppleClang 14.0.0.14000029
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/clang - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /Library/Developer/CommandLineTools/usr/bin/clang++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- cmake_install_datadir = share
-- cmake_install_docdir = NOTFOUND
-- cmake_install_includedirs = include
-- cmake_install_libdirs = lib
-- cmake_defined_ok = TRUE
-- cppad_prefix = /usr/local
-- cppad_postfix = NOTFOUND
-- cppad_cxx_flags =
-- cppad_profile_flag = NOTFOUND
-- cppad_testvector = cppad
-- cppad_max_num_threads = 48
-- cppad_tape_id_type = unsigned int
-- cppad_tape_addr_type = unsigned int
-- cppad_static_lib = FALSE
-- cppad_debug_and_release = TRUE
-- Performing Test minimal_cplusplus
-- Performing Test minimal_cplusplus - Success
-- minimal_cplusplus = 1
-- Performing Test use_cplusplus_2017_ok
-- Performing Test use_cplusplus_2017_ok - Success
-- use_cplusplus_2017_ok = 1
-- CMAKE_SYSTEM_NAME = Darwin
-- cppad_debug_which = debug_none
-- CMAKE_BUILD_TYPE = minsizerel
-- make check: avialable
-- include_adolc = FALSE
-- include_ipopt = FALSE
-- CMAKE_CXX_FLAGS_RELEASE = -O3 -DNDEBUG
-- Skipping OpenMP on Darwin (Mac) systems. 2DO: fix this
-- Found Boost: /opt/R/arm64/lib/cmake/Boost-1.86.0/BoostConfig.cmake (found version "1.86.0") found components: thread
-- boost_prefix = /opt/R/arm64
-- Found /opt/R/arm64/include
-- Found /opt/R/arm64/lib
-- is_cppad_lib_dynamic = 1
-- cppad_c_compiler_cmd = clang
-- c_compiler_msvc_clang = 0
-- cppad_c_compiler_msvc_flags = 0
-- cppad_c_compiler_gnu_flags = 1
-- cppad_boostvector = 0
-- cppad_cppadvector = 1
-- cppad_eigenvector = 0
-- cppad_stdvector = 0
-- Performing Test cppad_has_gettimeofday
-- Performing Test cppad_has_gettimeofday - Success
-- cppad_has_gettimeofday = 1
-- Performing Test cppad_tape_id_type_is_unsigned
-- Performing Test cppad_tape_id_type_is_unsigned - Success
-- cppad_tape_id_type_is_unsigned = 1
-- Performing Test cppad_tape_addr_type_is_unsigned
-- Performing Test cppad_tape_addr_type_is_unsigned - Success
-- cppad_tape_addr_type_is_unsigned = 1
-- Performing Test cppad_has_mkstemp
-- Performing Test cppad_has_mkstemp - Success
-- cppad_has_mkstemp = 1
-- Performing Test cppad_has_tmpnam_s
-- Performing Test cppad_has_tmpnam_s - Failed
-- cppad_has_tmpnam_s = 0
-- Performing Test cppad_is_same_unsigned_int_size_t
-- Performing Test cppad_is_same_unsigned_int_size_t - Failed
-- cppad_is_same_unsigned_int_size_t = 0
-- Performing Test cppad_is_same_tape_addr_type_size_t
-- Performing Test cppad_is_same_tape_addr_type_size_t - Failed
-- cppad_is_same_tape_addr_type_size_t = 0
-- Performing Test first_block_t_mod_double_zero
-- Performing Test first_block_t_mod_double_zero - Success
-- first_block_t_mod_double_zero = 1
-- Performing Test second_block_t_mod_double_zero
-- Performing Test second_block_t_mod_double_zero - Success
-- second_block_t_mod_double_zero = 1
-- soversion = 1828.5
-- Not Windows system so building shared cppad_lib
-- make check_val_graph: available
-- make check_example_abs_normal: available
-- make check_example_atomic_four_lin_ode: available
-- make check_example_atomic_four_mat_mul: available
-- make check_example_atomic_four_vector: available
-- make check_example_atomic_four: available
-- make check_example_atomic_three: available
-- make check_example_atomic_two: available
-- make check_example_chkpoint_two: available
-- make check_example_compare_change: available
-- make check_example_general: available
-- make check_example_get_started: available
-- make check_example_graph: available
-- make check_example_jit: available
-- make check_example_json: available
-- pthread library path = /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/lib/libpthread.tbd
-- Looking for pthread_barrier_wait in pthread
-- Looking for pthread_barrier_wait in pthread - not found
-- Performing Test boost_multi_thread_ok
-- Performing Test boost_multi_thread_ok - Success
-- boost_multi_thread_ok = 1
-- make check_example_multi_thread_bthread: available
-- make check_example_multi_thread: available
-- make check_example_optimize: available
-- make check_example_print_for: available
-- make check_example_sparse: available
-- make check_example_utility: available
-- make check_example: available
-- make check_introduction: available
-- make check_test_more_deprecated_atomic_two: available
-- make check_test_more_deprecated_chkpoint_one: available
-- make check_test_more_deprecated: available
-- make check_test_more_compare_c_c: available
-- make check_test_more_compare_c_cpp: available
-- make check_test_more_compare_c: available
-- make check_test_more_debug_rel: available
-- make check_test_more_general: available
-- make check_test_more: available
-- make check_speed_cppad: available
-- make check_speed_cppad_jit: available
-- make check_speed_double: available
-- make check_speed_example: available
-- make check_speed_program: available
-- make check_speed_xpackage: available
-- make check_speed: available
-- Configuring done
-- Generating done
-- Build files have been written to: /Volumes/Builds/packages/big-sur-arm64/results/4.5/scorematchingad.Rcheck/00_pkg_src/scorematchingad/inst/cppad/build
/Volumes/Builds/packages/big-sur-arm64/results/4.5/scorematchingad.Rcheck/00_pkg_src/scorematchingad
[1] TRUE
[1] TRUE
configure: creating ./config.status
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c abort_recording.cpp -o abort_recording.o
In file included from abort_recording.cpp:3:
In file included from ../inst/include/scorematchingad_forward.h:6:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/RcppCommon.h:130:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/exceptions.h:60:21: warning: inline function 'Rcpp::exception::record_stack_trace' is not defined [-Wundefined-inline]
inline void record_stack_trace();
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/exceptions.h:41:13: note: used here
record_stack_trace();
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/exceptions.h:55:21: warning: inline function 'Rcpp::exception::copy_stack_trace_to_r' is not defined [-Wundefined-inline]
inline void copy_stack_trace_to_r() const;
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/exceptions.h:348:8: note: used here
ex.copy_stack_trace_to_r();
^
In file included from abort_recording.cpp:3:
In file included from ../inst/include/scorematchingad_forward.h:6:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/RcppCommon.h:128:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/protection/protection.h:23:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/protection/Armor.h:38:23: warning: inline function 'Rcpp::Armor<SEXPREC *>::operator=<SEXPREC *>' is not defined [-Wundefined-inline]
inline Armor& operator=( const U& x ) ;
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/r_cast.h:35:21: note: used here
res = Rcpp_fast_eval(call, R_GlobalEnv);
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c approx.cpp -o approx.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c error_handler.cpp -o error_handler.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c exposemanifold.cpp -o exposemanifold.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c fixdynamic.cpp -o fixdynamic.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c pADFun.cpp -o pADFun.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c pADFun_retape.cpp -o pADFun_retape.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c tapebdryweight.cpp -o tapebdryweight.o
In file included from tapebdryweight.cpp:1:
In file included from ./tapebdryweight.h:4:
In file included from ../inst/include/scorematchingad_forward.h:6:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/RcppCommon.h:130:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/exceptions.h:60:21: warning: inline function 'Rcpp::exception::record_stack_trace' is not defined [-Wundefined-inline]
inline void record_stack_trace();
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/exceptions.h:41:13: note: used here
record_stack_trace();
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/exceptions.h:55:21: warning: inline function 'Rcpp::exception::copy_stack_trace_to_r' is not defined [-Wundefined-inline]
inline void copy_stack_trace_to_r() const;
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/exceptions.h:348:8: note: used here
ex.copy_stack_trace_to_r();
^
In file included from tapebdryweight.cpp:1:
In file included from ./tapebdryweight.h:4:
In file included from ../inst/include/scorematchingad_forward.h:6:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/RcppCommon.h:128:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/protection/protection.h:23:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/protection/Armor.h:38:23: warning: inline function 'Rcpp::Armor<SEXPREC *>::operator=<SEXPREC *>' is not defined [-Wundefined-inline]
inline Armor& operator=( const U& x ) ;
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/r_cast.h:35:21: note: used here
res = Rcpp_fast_eval(call, R_GlobalEnv);
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c tapell.cpp -o tapell.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c tapesmd.cpp -o tapesmd.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c temp_file.cpp -o temp_file.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o scorematchingad.so RcppExports.o abort_recording.o approx.o error_handler.o exposemanifold.o fixdynamic.o pADFun.o pADFun_retape.o tapebdryweight.o tapell.o tapesmd.o temp_file.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.5/scorematchingad.Rcheck/00LOCK-scorematchingad/00new/scorematchingad/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
in method for ‘print’ with signature ‘"Rcpp_ADFun"’: no definition for class “Rcpp_ADFun”
in method for ‘show’ with signature ‘"Rcpp_ADFun"’: no definition for class “Rcpp_ADFun”
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scorematchingad)