* using log directory ‘/Volumes/Builds/packages/big-sur-arm64/results/4.5/inlamemi.Rcheck’ * using R Under development (unstable) (2025-01-24 r87627) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 14.2.0 * running under: macOS Ventura 13.4 * using session charset: UTF-8 * checking for file ‘inlamemi/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘inlamemi’ version ‘1.1.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... INFO Package suggested but not available for checking: ‘INLA’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘inlamemi’ can be installed ... [2s/3s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-macos-arm64/inlamemi-00install.html' for details. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘plot_functions.R’ * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [2s/2s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [1s/1s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [1s/1s] OK Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [1s/1s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [16s/18s] ERROR Error(s) in re-building vignettes: --- re-building ‘building_models_without_inlamemi.Rmd’ using rmarkdown --- finished re-building ‘building_models_without_inlamemi.Rmd’ --- re-building ‘framingham_heart_study.Rmd’ using rmarkdown File figure/unnamed-chunk-6-1.png not found in resource path Error: processing vignette 'framingham_heart_study.Rmd' failed with diagnostics: pandoc document conversion failed with error 99 --- failed re-building ‘framingham_heart_study.Rmd’ --- re-building ‘modifying_default_plot.Rmd’ using rmarkdown File figure/unnamed-chunk-3-1.png not found in resource path Error: processing vignette 'modifying_default_plot.Rmd' failed with diagnostics: pandoc document conversion failed with error 99 --- failed re-building ‘modifying_default_plot.Rmd’ --- re-building ‘multiple_error_variables.Rmd’ using rmarkdown File figure/unnamed-chunk-8-1.png not found in resource path Error: processing vignette 'multiple_error_variables.Rmd' failed with diagnostics: pandoc document conversion failed with error 99 --- failed re-building ‘multiple_error_variables.Rmd’ --- re-building ‘nhanes_survival_model.Rmd’ using rmarkdown File figure/unnamed-chunk-5-1.png not found in resource path Error: processing vignette 'nhanes_survival_model.Rmd' failed with diagnostics: pandoc document conversion failed with error 99 --- failed re-building ‘nhanes_survival_model.Rmd’ --- re-building ‘simulated_examples.Rmd’ using rmarkdown File figure/unnamed-chunk-4-1.png not found in resource path Error: processing vignette 'simulated_examples.Rmd' failed with diagnostics: pandoc document conversion failed with error 99 --- failed re-building ‘simulated_examples.Rmd’ --- re-building ‘visualize_model_structure.Rmd’ using rmarkdown --- finished re-building ‘visualize_model_structure.Rmd’ SUMMARY: processing the following files failed: ‘framingham_heart_study.Rmd’ ‘modifying_default_plot.Rmd’ ‘multiple_error_variables.Rmd’ ‘nhanes_survival_model.Rmd’ ‘simulated_examples.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [4s/5s] OK * DONE Status: 1 ERROR, 1 NOTE * using check arguments '--no-clean-on-error ' * elapsed time (check, wall clock): 0:47