* installing *source* package ‘bsamGP’ ...
** this is package ‘bsamGP’ version ‘1.2.6’
** package ‘bsamGP’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using Fortran compiler: ‘GNU Fortran (GCC) 14.2.0’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ToolsRfunc.c -o ToolsRfunc.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c ToolsRfunf.f90 -o ToolsRfunf.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c bsamTools.f90 -o bsamTools.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c gbsamTools.f90 -o gbsamTools.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c blreg.f90 -o blreg.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c bqreg.f90 -o bqreg.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c bqreggetlogg.f90 -o bqreggetlogg.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c bsad.f90 -o bsad.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c bsaqam.f90 -o bsaqam.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c bsaqamdpscale.f90 -o bsaqamdpscale.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c bsaram.f90 -o bsaram.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c bsaramdplocationscale.f90 -o bsaramdplocationscale.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c bsaramdpscale.f90 -o bsaramdpscale.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c bsaramgetlogg.f90 -o bsaramgetlogg.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c gbglmgetlogg.f90 -o gbglmgetlogg.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c gblogitKS.f90 -o gblogitKS.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c gblogitMH.f90 -o gblogitMH.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c gbnegbinMH.f90 -o gbnegbinMH.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c gbpoisgammMH.f90 -o gbpoisgammMH.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c gbpoisMH.f90 -o gbpoisMH.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c gbprobitAC.f90 -o gbprobitAC.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c gbsaramgetlogg.f90 -o gbsaramgetlogg.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c gbsarlogitKS.f90 -o gbsarlogitKS.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c gbsarlogitMH.f90 -o gbsarlogitMH.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c gbsarnegbinMH.f90 -o gbsarnegbinMH.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c gbsarpoisgammMH.f90 -o gbsarpoisgammMH.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c gbsarpoisMH.f90 -o gbsarpoisMH.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c gbsarprobitAC.f90 -o gbsarprobitAC.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c predictgbsam.f90 -o predictgbsam.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c predictbsam.f90 -o predictbsam.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c bsarbig.f90 -o bsarbig.o
bsarbig.f90:48:29:
48 | ndata(1)=count(xdata.le.a(1))
| ^
Warning: 'MEM[(real(kind=8)[0:D.5152] *)_882][0]' may be used uninitialized [-Wmaybe-uninitialized]
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o bsamGP.so registerDynamicSymbol.o ToolsRfunc.o ToolsRfunf.o bsamTools.o gbsamTools.o blreg.o bqreg.o bqreggetlogg.o bsad.o bsaqam.o bsaqamdpscale.o bsaram.o bsaramdplocationscale.o bsaramdpscale.o bsaramgetlogg.o gbglmgetlogg.o gblogitKS.o gblogitMH.o gbnegbinMH.o gbpoisgammMH.o gbpoisMH.o gbprobitAC.o gbsaramgetlogg.o gbsarlogitKS.o gbsarlogitMH.o gbsarnegbinMH.o gbsarpoisgammMH.o gbsarpoisMH.o gbsarprobitAC.o predictgbsam.o predictbsam.o bsarbig.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -lm -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
ld: warning: could not create compact unwind for ___bsamtools_MOD_getphi: does not use standard frame
ld: warning: could not create compact unwind for ___bsamtools_MOD_squishdowngen: does not use standard frame
ld: warning: could not create compact unwind for ___bsamtools_MOD_squishup: does not use standard frame
ld: warning: could not create compact unwind for ___toolsrfunf_MOD_intsim: does not use standard frame
ld: warning: could not create compact unwind for ___toolsrfunf_MOD_which: does not use standard frame
ld: warning: could not create compact unwind for ___toolsrfunf_MOD_find_uniquei: does not use standard frame
ld: warning: could not create compact unwind for ___toolsrfunf_MOD_ikron: does not use standard frameld: warning: could not create compact unwind for _bqreggetlogg_: does not use standard frame
ld: warning: could not create compact unwind for _bqreg_: does not use standard frame
ld: warning: could not create compact unwind for _getlogits.5: does not use standard frame
ld: warning: could not create compact unwind for _getpar.2: does not use standard frame
ld: warning: could not create compact unwind for _getfourier.3: does not use standard frame
ld: warning: could not create compact unwind for _getsmooth.4: does not use standard frame
ld: warning: could not create compact unwind for _domcmcsemi.9: does not use standard frame
ld: warning: could not create compact unwind for _domcmcpar.10: does not use standard frame
ld: warning: could not create compact unwind for _domcmcseminokappa.8: does not use standard frame
ld: warning: could not create compact unwind for _domcmcsemimaxkappa.7: does not use standard frame
ld: warning: could not create compact unwind for _bsad_: does not use standard frame
ld: warning: could not create compact unwind for ___bsamtools_MOD_squishdown: does not use standard frame
ld: warning: could not create compact unwind for ___bsamtools_MOD_quadmult: does not use standard frame
ld: warning: could not create compact unwind for ___bsamtools_MOD_getextf: does not use standard frame
ld: warning: could not create compact unwind for ___bsamtools_MOD_getuf: does not use standard frame
ld: warning: could not create compact unwind for ___bsamtools_MOD_getrotatesf: does not use standard frame
ld: warning: could not create compact unwind for ___bsamtools_MOD_getsf: does not use standard frame
ld: warning: ld: warning: ld: warning: could not create compact unwind for _dp_update_configs_nogaps.6: does not use standard frame
ld: warning: ld: warning: could not create compact unwind for ___gbsamtools_MOD_getphi: does not use standard frame
ld: warning: could not create compact unwind for ___gbsamtools_MOD_squishup: does not use standard frame
ld: warning: could not create compact unwind for ___gbsamtools_MOD_squishdown: does not use standard frame
ld: warning: could not create compact unwind for ___gbsamtools_MOD_quadmult: does not use standard frame
ld: warning: could not create compact unwind for ___gbsamtools_MOD_getuf: does not use standard frame
ld: warning: could not create compact unwind for ___gbsamtools_MOD_getrotatesf: does not use standard frame
ld: warning: could not create compact unwind for ___gbsamtools_MOD_getsf: does not use standard frame
ld: warning: could not create compact unwind for ___gbsamtools_MOD_getconcavef: does not use standard frame
ld: warning: could not create compact unwind for ___gbsamtools_MOD_getconvexf: does not use standard frame
ld: warning: could not create compact unwind for ___gbsamtools_MOD_getupf: does not use standard frame
ld: warning: could not create compact unwind for ___gbsamtools_MOD_intxgrid: does not use standard frame
could not create compact unwind for _dp_update_predictive_dens.0: does not use standard frame
ld: warning: could not create compact unwind for _getmcmc.7: does not use standard frame
ld: warning: could not create compact unwind for _bsaramdplocationscale_: does not use standard frame
ld: warning: could not create compact unwind for _dp_update_configs_nogaps.4: does not use standard frame
ld: warning: could not create compact unwind for _getmcmc.5: does not use standard frame
ld: warning: could not create compact unwind for _bsaramdpscale_: does not use standard frame
could not create compact unwind for ___bsamtools_MOD_getconcavef: does not use standard frame
ld: warning: could not create compact unwind for ___bsamtools_MOD_intxgrid: does not use standard frame
ld: warning: could not create compact unwind for _bsaramgetlogg_: does not use standard frame
ld: warning: could not create compact unwind for _gbglmgetlogg_: does not use standard frame
ld: warning: could not create compact unwind for _gblogitks_: does not use standard frame
ld: warning: could not create compact unwind for _getmcmc.1: does not use standard frame
ld: warning: could not create compact unwind for _dp_update_configs_nogaps.4: does not use standard frame
ld: warning: could not create compact unwind for _dp_update_predictive_dens.0: does not use standard frame
ld: warning: could not create compact unwind for _getmcmc.5: does not use standard frame
ld: warning: could not create compact unwind for _bsaqamdpscale_: does not use standard frame
could not create compact unwind for ___toolsrfunf_MOD_sweep: does not use standard frame
ld: warning: could not create compact unwind for ___toolsrfunf_MOD_covariance: does not use standard frame
ld: warning: could not create compact unwind for ___toolsrfunf_MOD_determinant: does not use standard frame
ld: warning: could not create compact unwind for ___toolsrfunf_MOD_mvnpdf: does not use standard frame
ld: warning: could not create compact unwind for ___toolsrfunf_MOD_zeroin: does not use standard frame
ld: warning: could not create compact unwind for ___toolsrfunf_MOD_gigrnd: does not use standard frame
ld: warning: could not create compact unwind for ___toolsrfunf_MOD_mvnrnd: does not use standard frame
ld: warning: could not create compact unwind for _gbpoismh_: does not use standard frame
ld: warning: could not create compact unwind for _gbsaramgetlogg_: does not use standard frame
ld: warning: could not create compact unwind for _gbprobitac_: does not use standard frame
ld: warning: could not create compact unwind for _loglikprior_beta.3: does not use standard frame
ld: warning: could not create compact unwind for _loglikprior_kappa.1: does not use standard frame
ld: warning: could not create compact unwind for _gbpoisgammmh_: does not use standard frame
ld: warning: could not create compact unwind for _gblogitmh_: does not use standard frame
ld: warning: could not create compact unwind for _getlogprior.0: does not use standard frame
ld: warning: could not create compact unwind for _getmcmc.2: does not use standard frame
ld: warning: could not create compact unwind for _getmcmc.1: does not use standard frame
ld: warning: could not create compact unwind for _getlogpost_kappa.2: does not use standard frame
ld: warning: could not create compact unwind for _loglik_negbin.0: does not use standard frame
ld: warning: could not create compact unwind for _getlogprior.0: does not use standard frame
ld: warning: could not create compact unwind for _getloglik_negbin.1: does not use standard frame
ld: warning: could not create compact unwind for _gbsarlogitmh_: does not use standard frame
ld: warning: could not create compact unwind for _getmcmc.2: does not use standard frameld: warning: ld: warning: could not create compact unwind for _getlogprior.0: does not use standard frame
ld: warning: ld: warning: could not create compact unwind for _blreg_: does not use standard frame
ld: warning: ld: warning: could not create compact unwind for _getmcmc.2: does not use standard frame
could not create compact unwind for _getlogprior.0: does not use standard frameld: warning: could not create compact unwind for _bsaram_: does not use standard frameld: warning: could not create compact unwind for _getmcmc.4: does not use standard frame
could not create compact unwind for _bsaqam_: does not use standard frameld: warning:
could not create compact unwind for _getmcmc.2: does not use standard frame
ld: warning: could not create compact unwind for _getlogprior.0: does not use standard frame
ld: warning: could not create compact unwind for _gbsarnegbinmh_: does not use standard frame
ld: warning: could not create compact unwind for _predictgbsam_: does not use standard frame
ld: warning: could not create compact unwind for _predictbsam_: does not use standard frame
ld: warning: could not create compact unwind for _bsarbig_: does not use standard frame
ld: warning: could not create compact unwind for ___emutls_get_address: does not use standard frame
ld: warning: could not create compact unwind for _allocate_tramp_ctrl: does not use standard frame
ld: warning: could not create compact unwind for ___gcc_nested_func_ptr_created: does not use standard frame
ld: warning: could not create compact unwind for ___gcc_nested_func_ptr_deleted: does not use standard frame
could not create compact unwind for _gbnegbinmh_: does not use standard frame
ld: warning: could not create compact unwind for _gbsarlogitks_: does not use standard frame
ld: warning: could not create compact unwind for _getloglik_poisson.1: does not use standard frame
ld: warning: could not create compact unwind for _getmcmc.2: does not use standard frame
ld: warning: could not create compact unwind for _getlogprior.0: does not use standard frame
ld: warning: ld: warning: could not create compact unwind for _getlogprior.0: does not use standard frameld: warning: could not create compact unwind for _gbsarpoisgammmh_: does not use standard frame
could not create compact unwind for _getlogprior.0: does not use standard frame
ld: warning: could not create compact unwind for _gbsarprobitac_: does not use standard frame
ld: warning: could not create compact unwind for _gbsarpoismh_: does not use standard frame
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.5/bsamGP.Rcheck/00LOCK-bsamGP/00new/bsamGP/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bsamGP)