* installing *source* package ‘VAJointSurv’ ...
** package ‘VAJointSurv’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++17
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/psqn/include' -I/opt/R/arm64/include -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c R-interface.cpp -o R-interface.o
In file included from R-interface.cpp:13:
./ghq-delayed-entry.h:90:10: warning: class 'eval_data' was previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
friend class eval_data;
^
./ghq-delayed-entry.h:89:10: note: previous use is here
struct eval_data;
^
./ghq-delayed-entry.h:181:10: warning: class 'impl' was previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
friend class impl;
^
./ghq-delayed-entry.h:180:10: note: previous use is here
struct impl;
^
In file included from R-interface.cpp:2:
In file included from ./marker-term.h:6:
In file included from ./bases.h:9:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
char myPad[64];
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/psqn/include' -I/opt/R/arm64/include -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/psqn/include' -I/opt/R/arm64/include -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c VA-parameter.cpp -o VA-parameter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/psqn/include' -I/opt/R/arm64/include -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c bases.cpp -o bases.o
In file included from bases.cpp:1:
In file included from ./bases.h:9:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
char myPad[64];
^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/psqn/include' -I/opt/R/arm64/include -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c ghq-delayed-entry.cpp -o ghq-delayed-entry.o
In file included from ghq-delayed-entry.cpp:1:
./ghq-delayed-entry.h:90:10: warning: class 'eval_data' was previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
friend class eval_data;
^
./ghq-delayed-entry.h:89:10: note: previous use is here
struct eval_data;
^
./ghq-delayed-entry.h:181:10: warning: class 'impl' was previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
friend class impl;
^
./ghq-delayed-entry.h:180:10: note: previous use is here
struct impl;
^
In file included from ghq-delayed-entry.cpp:1:
In file included from ./ghq-delayed-entry.h:3:
In file included from ./bases.h:9:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
char myPad[64];
^
In file included from ghq-delayed-entry.cpp:1:
./ghq-delayed-entry.h:72:16: warning: private field 'n_fixef' is not used [-Wunused-private-field]
vajoint_uint n_fixef;
^
4 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/psqn/include' -I/opt/R/arm64/include -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c ghq.cpp -o ghq.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/psqn/include' -I/opt/R/arm64/include -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c init.cpp -o init.o
In file included from init.cpp:1:
In file included from ./cfaad/AADInit.hpp:32:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
char myPad[64];
^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/psqn/include' -I/opt/R/arm64/include -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c integrand-expected-survival.cpp -o integrand-expected-survival.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/psqn/include' -I/opt/R/arm64/include -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c kl-term.cpp -o kl-term.o
In file included from kl-term.cpp:1:
In file included from ./kl-term.h:8:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
char myPad[64];
^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/psqn/include' -I/opt/R/arm64/include -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c marker-term.cpp -o marker-term.o
In file included from marker-term.cpp:1:
In file included from ./marker-term.h:6:
In file included from ./bases.h:9:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
char myPad[64];
^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/psqn/include' -I/opt/R/arm64/include -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c test-VA-parameter.cpp -o test-VA-parameter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/psqn/include' -I/opt/R/arm64/include -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c test-bases.cpp -o test-bases.o
In file included from test-bases.cpp:2:
In file included from ./bases.h:9:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
char myPad[64];
^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/psqn/include' -I/opt/R/arm64/include -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c test-ghq-delayed-entry.cpp -o test-ghq-delayed-entry.o
In file included from test-ghq-delayed-entry.cpp:2:
./ghq-delayed-entry.h:90:10: warning: class 'eval_data' was previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
friend class eval_data;
^
./ghq-delayed-entry.h:89:10: note: previous use is here
struct eval_data;
^
./ghq-delayed-entry.h:181:10: warning: class 'impl' was previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
friend class impl;
^
./ghq-delayed-entry.h:180:10: note: previous use is here
struct impl;
^
In file included from test-ghq-delayed-entry.cpp:2:
In file included from ./ghq-delayed-entry.h:3:
In file included from ./bases.h:9:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
char myPad[64];
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/psqn/include' -I/opt/R/arm64/include -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c test-integrand-expected-survival.cpp -o test-integrand-expected-survival.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/psqn/include' -I/opt/R/arm64/include -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c test-kl-term.cpp -o test-kl-term.o
In file included from test-kl-term.cpp:2:
In file included from ./kl-term.h:8:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
char myPad[64];
^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/psqn/include' -I/opt/R/arm64/include -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c test-log-cholesky.cpp -o test-log-cholesky.o
In file included from test-log-cholesky.cpp:2:
In file included from ./log-cholesky.h:7:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
char myPad[64];
^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/psqn/include' -I/opt/R/arm64/include -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c test-lp-joint.cpp -o test-lp-joint.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/psqn/include' -I/opt/R/arm64/include -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c test-marker-term.cpp -o test-marker-term.o
In file included from test-marker-term.cpp:1:
In file included from ./marker-term.h:6:
In file included from ./bases.h:9:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
char myPad[64];
^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/psqn/include' -I/opt/R/arm64/include -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c test-runner.cpp -o test-runner.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/psqn/include' -I/opt/R/arm64/include -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c test-survival-term.cpp -o test-survival-term.o
In file included from test-survival-term.cpp:1:
In file included from ./survival-term.h:5:
In file included from ./bases.h:9:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
char myPad[64];
^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/psqn/include' -I/opt/R/arm64/include -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c wmem.cpp -o wmem.o
In file included from wmem.cpp:1:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
char myPad[64];
^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o VAJointSurv.so R-interface.o RcppExports.o VA-parameter.o bases.o ghq-delayed-entry.o ghq.o init.o integrand-expected-survival.o kl-term.o marker-term.o test-VA-parameter.o test-bases.o test-ghq-delayed-entry.o test-integrand-expected-survival.o test-kl-term.o test-log-cholesky.o test-lp-joint.o test-marker-term.o test-runner.o test-survival-term.o wmem.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: could not create compact unwind for ___emutls_get_address: registers 23 and 24 not saved contiguously in frame
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.5/VAJointSurv.Rcheck/00LOCK-VAJointSurv/00new/VAJointSurv/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (VAJointSurv)