* using log directory ‘/Volumes/Builds/packages/big-sur-arm64/results/4.5/SCpubr.Rcheck’
* using R Under development (unstable) (2025-01-24 r87627)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.4
* using session charset: UTF-8
* checking for file ‘SCpubr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SCpubr’ version ‘2.0.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Packages suggested but not available for checking:
  'AUCell', 'decoupleR', 'infercnv', 'Nebulosa', 'org.Hs.eg.db'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SCpubr’ can be installed ... [5s/6s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-macos-arm64/SCpubr-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking whether startup messages can be suppressed ... [0s/0s] OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [7s/8s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘infercnv’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [0s/0s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [9s/11s] ERROR
  Running ‘testthat.R’ [9s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # nolint start
  > library(testthat)
  > library(SCpubr)
  
  
  ── SCpubr 2.0.2 ────────────────────────────────────────────────────────────────
  
  ℹ Have a look at extensive tutorials in SCpubr's book.
  
  ✔ If you use SCpubr in your research, please cite it accordingly.
  
  ★ If the package is useful to you, consider leaving a Star in the GitHub repository.
  
  ! Keep track of the package updates on Twitter (@Enblacar) or in the Official NEWS website.
  
  ♥ Happy plotting!
  
  
  
  ── Tips! ──
  
  ℹ To remove the white and black end from continuous palettes, use: options("SCpubr.ColorPaletteEnds" = FALSE)
  
  ✖ To suppress this startup message, use: suppressPackageStartupMessages(library(SCpubr))
  ✖ Alternatively, you can also set the following option: options("SCpubr.verbose" = FALSE)
    And then load the package normally (and faster) as: library(SCpubr)
  
  ────────────────────────────────────────────────────────────────────────────────
  > # nolint end
  > test_check("SCpubr")
  
  Error in `FUN()`:
  ! In path: "/Volumes/Builds/packages/big-sur-arm64/results/4.5/SCpubr.Rcheck/tests/testthat/setup.R"
  Caused by error in `dbFileConnect()`:
  ! DB file '' not found
  Backtrace:
       ▆
    1. ├─testthat::test_check("SCpubr")
    2. │ └─testthat::test_dir(...)
    3. │   └─testthat:::test_files(...)
    4. │     └─testthat:::test_files_serial(...)
    5. │       └─testthat:::test_files_setup_state(...)
    6. │         └─testthat::source_test_setup(".", env)
    7. │           └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
    8. │             └─base::lapply(...)
    9. │               └─testthat (local) FUN(X[[i]], ...)
   10. │                 └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap)
   11. │                   ├─base::withCallingHandlers(...)
   12. │                   └─base::eval(exprs, env)
   13. │                     └─base::eval(exprs, env)
   14. │                       └─AnnotationDbi::loadDb(...) at tests/testthat/setup.R:72:5
   15. │                         └─AnnotationDbi::dbFileConnect(file)
   16. │                           └─base::stop("DB file '", dbfile, "' not found")
   17. └─base::.handleSimpleError(`<fn>`, "DB file '' not found", base::quote(dbFileConnect(file)))
   18.   └─testthat (local) h(simpleError(msg, call))
   19.     └─rlang::abort(...)
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [6s/8s] OK
* checking PDF version of manual ... [6s/7s] OK
* DONE
Status: 1 ERROR
* using check arguments '--no-clean-on-error '

* elapsed time (check, wall clock): 1:10