• using R Under development (unstable) (2025-01-24 r87627)
• using platform: aarch64-apple-darwin20
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 14.2.0
• running under: macOS Ventura 13.4
• using session charset: UTF-8
• checking for file ‘SCpubr/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘SCpubr’ version ‘2.0.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... INFO Packages suggested but not available for checking:   'AUCell', 'decoupleR', 'infercnv', 'Nebulosa', 'org.Hs.eg.db'
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘SCpubr’ can be installed ... [5s/6s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
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• checking loading without being on the library search path ... [0s/0s] OK
• checking whether startup messages can be suppressed ... [0s/0s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [7s/8s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... INFO Package unavailable to check Rd xrefs: ‘infercnv’
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [0s/0s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [9s/11s] ERROR   Running ‘testthat.R’ [9s/10s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # nolint start   > library(testthat)   > library(SCpubr)         ── SCpubr 2.0.2 ────────────────────────────────────────────────────────────────      ℹ Have a look at extensive tutorials in SCpubr's book.      ✔ If you use SCpubr in your research, please cite it accordingly.      ★ If the package is useful to you, consider leaving a Star in the GitHub repository.      ! Keep track of the package updates on Twitter (@Enblacar) or in the Official NEWS website.      ♥ Happy plotting!            ── Tips! ──      ℹ To remove the white and black end from continuous palettes, use: options("SCpubr.ColorPaletteEnds" = FALSE)      ✖ To suppress this startup message, use: suppressPackageStartupMessages(library(SCpubr))   ✖ Alternatively, you can also set the following option: options("SCpubr.verbose" = FALSE)     And then load the package normally (and faster) as: library(SCpubr)      ────────────────────────────────────────────────────────────────────────────────   > # nolint end   > test_check("SCpubr")      Error in `FUN()`:   ! In path: "/Volumes/Builds/packages/big-sur-arm64/results/4.5/SCpubr.Rcheck/tests/testthat/setup.R"   Caused by error in `dbFileConnect()`:   ! DB file '' not found   Backtrace:        ▆     1. ├─testthat::test_check("SCpubr")     2. │ └─testthat::test_dir(...)     3. │ └─testthat:::test_files(...)     4. │ └─testthat:::test_files_serial(...)     5. │ └─testthat:::test_files_setup_state(...)     6. │ └─testthat::source_test_setup(".", env)     7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)     8. │ └─base::lapply(...)     9. │ └─testthat (local) FUN(X[[i]], ...)    10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap)    11. │ ├─base::withCallingHandlers(...)    12. │ └─base::eval(exprs, env)    13. │ └─base::eval(exprs, env)    14. │ └─AnnotationDbi::loadDb(...) at tests/testthat/setup.R:72:5    15. │ └─AnnotationDbi::dbFileConnect(file)    16. │ └─base::stop("DB file '", dbfile, "' not found")    17. └─base::.handleSimpleError(`<fn>`, "DB file '' not found", base::quote(dbFileConnect(file)))    18. └─testthat (local) h(simpleError(msg, call))    19. └─rlang::abort(...)   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [6s/8s] OK
• checking PDF version of manual ... [6s/7s] OK
• DONE Status: 1 ERROR
• using check arguments '--no-clean-on-error '