* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/wxgenR.Rcheck’
* using R Under development (unstable) (2025-02-22 r87796)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘wxgenR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘wxgenR’ version ‘1.4.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘wxgenR’ can be installed ... [17s/18s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/wxgenR-00install.html' for details.
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [23s/25s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [91s/153s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘Vignette_BlacksburgVA.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/wxgenR.Rcheck/vign_test/wxgenR/vignettes/Vignette_BlacksburgVA_files/figure-html/unnamed-chunk-9-1.png
768x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 187088 bytes
Input file size = 187430 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 177567
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 177567
Output IDAT size = 177567 bytes (9521 bytes decrease)
Output file size = 177645 bytes (9785 bytes = 5.22% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/wxgenR.Rcheck/vign_test/wxgenR/vignettes/Vignette_BlacksburgVA_files/figure-html/unnamed-chunk-10-1.png
768x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 235973 bytes
Input file size = 236387 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 226320
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 226320
Output IDAT size = 226320 bytes (9653 bytes decrease)
Output file size = 226398 bytes (9989 bytes = 4.23% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/wxgenR.Rcheck/vign_test/wxgenR/vignettes/Vignette_BlacksburgVA_files/figure-html/unnamed-chunk-12-1.png
768x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 96398 bytes
Input file size = 96608 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 76067
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 76067
Output IDAT size = 76067 bytes (20331 bytes decrease)
Output file size = 76145 bytes (20463 bytes = 21.18% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/wxgenR.Rcheck/vign_test/wxgenR/vignettes/Vignette_BlacksburgVA_files/figure-html/unnamed-chunk-13-1.png
768x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 89659 bytes
Input file size = 89857 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 71030
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 71030
Output IDAT size = 71030 bytes (18629 bytes decrease)
Output file size = 71108 bytes (18749 bytes = 20.87% decrease)
--- finished re-building ‘Vignette_BlacksburgVA.Rmd’
--- re-building ‘Vignette_LowerSantaCruzRiverBasinAZ.Rmd’ using rmarkdown
Quitting from lines 198-201 [unnamed-chunk-6] (Vignette_LowerSantaCruzRiverBasinAZ.Rmd)
Error: processing vignette 'Vignette_LowerSantaCruzRiverBasinAZ.Rmd' failed with diagnostics:
The melt generic in data.table has been passed a data.frame and will attempt to redirect to the relevant reshape2 method; please note that reshape2 is superseded and is no longer actively developed, and this redirection is now deprecated. To continue using melt methods from reshape2 while both packages are attached, e.g. melt.list, you can prepend the namespace, i.e. reshape2::melt(.). In the next version, this warning will become an error.
--- failed re-building ‘Vignette_LowerSantaCruzRiverBasinAZ.Rmd’
SUMMARY: processing the following file failed:
‘Vignette_LowerSantaCruzRiverBasinAZ.Rmd’
Error: Vignette re-building failed.
Execution halted
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR