* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck’
* using R Under development (unstable) (2025-02-15 r87723)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘wingen/DESCRIPTION’ ... OK
* this is package ‘wingen’ version ‘2.1.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘wingen’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/wingen-00install.html' for details.
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘general_gd.R’ ‘plot_gd.R’ ‘window_gd.R’
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s/14s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [17s/21s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [45s/54s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [8m/12m] OK
Running ‘testthat.R’ [8m/12m]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [31m/20m] ERROR
Error(s) in re-building vignettes:
--- re-building ‘wingen-vignette.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/load example data-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32494 bytes
Input file size = 32608 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23951
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23951
Output IDAT size = 23951 bytes (8543 bytes decrease)
Output file size = 24029 bytes (8579 bytes = 26.31% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-2-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23947 bytes
Input file size = 24049 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20418
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20418
Output IDAT size = 20418 bytes (3529 bytes decrease)
Output file size = 20496 bytes (3553 bytes = 14.77% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-2-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23441 bytes
Input file size = 23543 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20000
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20000
Output IDAT size = 20000 bytes (3441 bytes decrease)
Output file size = 20078 bytes (3465 bytes = 14.72% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-2-3.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25339 bytes
Input file size = 25453 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21879
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21879
Output IDAT size = 21879 bytes (3460 bytes decrease)
Output file size = 21957 bytes (3496 bytes = 13.74% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-2-4.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22196 bytes
Input file size = 22298 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18200
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18200
Output IDAT size = 18200 bytes (3996 bytes decrease)
Output file size = 18278 bytes (4020 bytes = 18.03% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-4-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16780 bytes
Input file size = 16882 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12938
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12938
Output IDAT size = 12938 bytes (3842 bytes decrease)
Output file size = 13016 bytes (3866 bytes = 22.90% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/moving window-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14619 bytes
Input file size = 14709 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12212
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12212
Output IDAT size = 12212 bytes (2407 bytes decrease)
Output file size = 12290 bytes (2419 bytes = 16.45% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-5-1.png
528x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12805 bytes
Input file size = 12895 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11873
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 11091
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 11091
Output IDAT size = 11091 bytes (1714 bytes decrease)
Output file size = 11169 bytes (1726 bytes = 13.39% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-6-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13212 bytes
Input file size = 13302 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11656
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11656
Output IDAT size = 11656 bytes (1556 bytes decrease)
Output file size = 11734 bytes (1568 bytes = 11.79% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-6-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10641 bytes
Input file size = 10731 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10041
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9283
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9283
Output IDAT size = 9283 bytes (1358 bytes decrease)
Output file size = 9361 bytes (1370 bytes = 12.77% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-7-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18683 bytes
Input file size = 18785 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14111
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14111
Output IDAT size = 14111 bytes (4572 bytes decrease)
Output file size = 14189 bytes (4596 bytes = 24.47% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/circle-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 9980 bytes
Input file size = 10070 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9529
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8729
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8729
Output IDAT size = 8729 bytes (1251 bytes decrease)
Output file size = 8807 bytes (1263 bytes = 12.54% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/variable circle-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10804 bytes
Input file size = 10894 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10069
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9502
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9502
Output IDAT size = 9502 bytes (1302 bytes decrease)
Output file size = 9580 bytes (1314 bytes = 12.06% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-9-1.png
624x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16846 bytes
Input file size = 16948 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13211
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13211
Output IDAT size = 13211 bytes (3635 bytes decrease)
Output file size = 13289 bytes (3659 bytes = 21.59% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-9-2.png
624x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12925 bytes
Input file size = 13015 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12829
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 11292
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 11292
Output IDAT size = 11292 bytes (1633 bytes decrease)
Output file size = 11370 bytes (1645 bytes = 12.64% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/resist-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11511 bytes
Input file size = 11601 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10379
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 10046
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 10046
Output IDAT size = 10046 bytes (1465 bytes decrease)
Output file size = 10124 bytes (1477 bytes = 12.73% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-10-1.png
624x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16819 bytes
Input file size = 16921 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13103
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13103
Output IDAT size = 13103 bytes (3716 bytes decrease)
Output file size = 13181 bytes (3740 bytes = 22.10% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-10-2.png
624x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12628 bytes
Input file size = 12718 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12252
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 11044
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 11044
Output IDAT size = 11044 bytes (1584 bytes decrease)
Output file size = 11122 bytes (1596 bytes = 12.55% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-10-3.png
624x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 5667 bytes
Input file size = 5745 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 4996
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 4996
Output IDAT size = 4996 bytes (671 bytes decrease)
Output file size = 5074 bytes (671 bytes = 11.68% decrease)
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE