• using R Under development (unstable) (2025-02-15 r87723)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)     GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘wingen/DESCRIPTION’ ... OK
• this is package ‘wingen’ version ‘2.1.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘wingen’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... NOTE   Missing dependency on R >= 4.1.0 because package code uses the pipe   |> or function shorthand \(...) syntax added in R 4.1.0.   File(s) using such syntax:     ‘general_gd.R’ ‘plot_gd.R’ ‘window_gd.R’
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [11s/14s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [17s/21s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [45s/54s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [8m/12m] OK   Running ‘testthat.R’ [8m/12m]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [31m/20m] ERROR Error(s) in re-building vignettes: --- re-building ‘wingen-vignette.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/load example data-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32494 bytes Input file size = 32608 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23951   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23951 Output IDAT size = 23951 bytes (8543 bytes decrease) Output file size = 24029 bytes (8579 bytes = 26.31% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-2-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23947 bytes Input file size = 24049 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20418   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20418 Output IDAT size = 20418 bytes (3529 bytes decrease) Output file size = 20496 bytes (3553 bytes = 14.77% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-2-2.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23441 bytes Input file size = 23543 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20000   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20000 Output IDAT size = 20000 bytes (3441 bytes decrease) Output file size = 20078 bytes (3465 bytes = 14.72% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-2-3.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25339 bytes Input file size = 25453 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21879   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21879 Output IDAT size = 21879 bytes (3460 bytes decrease) Output file size = 21957 bytes (3496 bytes = 13.74% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-2-4.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 22196 bytes Input file size = 22298 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18200   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18200 Output IDAT size = 18200 bytes (3996 bytes decrease) Output file size = 18278 bytes (4020 bytes = 18.03% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-4-1.png 576x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 16780 bytes Input file size = 16882 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12938   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12938 Output IDAT size = 12938 bytes (3842 bytes decrease) Output file size = 13016 bytes (3866 bytes = 22.90% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/moving window-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14619 bytes Input file size = 14709 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12212   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12212 Output IDAT size = 12212 bytes (2407 bytes decrease) Output file size = 12290 bytes (2419 bytes = 16.45% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-5-1.png 528x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12805 bytes Input file size = 12895 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11873   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 11091   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 11091 Output IDAT size = 11091 bytes (1714 bytes decrease) Output file size = 11169 bytes (1726 bytes = 13.39% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-6-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13212 bytes Input file size = 13302 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11656   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11656 Output IDAT size = 11656 bytes (1556 bytes decrease) Output file size = 11734 bytes (1568 bytes = 11.79% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-6-2.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10641 bytes Input file size = 10731 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10041   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9283   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9283 Output IDAT size = 9283 bytes (1358 bytes decrease) Output file size = 9361 bytes (1370 bytes = 12.77% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-7-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18683 bytes Input file size = 18785 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14111   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14111 Output IDAT size = 14111 bytes (4572 bytes decrease) Output file size = 14189 bytes (4596 bytes = 24.47% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/circle-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 9980 bytes Input file size = 10070 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9529   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8729   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8729 Output IDAT size = 8729 bytes (1251 bytes decrease) Output file size = 8807 bytes (1263 bytes = 12.54% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/variable circle-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10804 bytes Input file size = 10894 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10069   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9502   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9502 Output IDAT size = 9502 bytes (1302 bytes decrease) Output file size = 9580 bytes (1314 bytes = 12.06% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-9-1.png 624x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 16846 bytes Input file size = 16948 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13211   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13211 Output IDAT size = 13211 bytes (3635 bytes decrease) Output file size = 13289 bytes (3659 bytes = 21.59% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-9-2.png 624x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12925 bytes Input file size = 13015 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12829   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 11292   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 11292 Output IDAT size = 11292 bytes (1633 bytes decrease) Output file size = 11370 bytes (1645 bytes = 12.64% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/resist-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11511 bytes Input file size = 11601 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10379   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 10046   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 10046 Output IDAT size = 10046 bytes (1465 bytes decrease) Output file size = 10124 bytes (1477 bytes = 12.73% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-10-1.png 624x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 16819 bytes Input file size = 16921 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13103   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13103 Output IDAT size = 13103 bytes (3716 bytes decrease) Output file size = 13181 bytes (3740 bytes = 22.10% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-10-2.png 624x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12628 bytes Input file size = 12718 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12252   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 11044   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 11044 Output IDAT size = 11044 bytes (1584 bytes decrease) Output file size = 11122 bytes (1596 bytes = 12.55% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/wingen.Rcheck/vign_test/wingen/vignettes/wingen-vignette_files/figure-html/unnamed-chunk-10-3.png 624x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 5667 bytes Input file size = 5745 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 4996   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 4996 Output IDAT size = 4996 bytes (671 bytes decrease) Output file size = 5074 bytes (671 bytes = 11.68% decrease)
• checking PDF version of manual ... OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR, 1 NOTE