- using R Under development (unstable) (2024-06-27 r86848)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (GCC) 14.1.0
GNU Fortran (GCC) 14.1.0
- running under: Fedora Linux 36 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘visualpred/DESCRIPTION’ ... OK
- this is package ‘visualpred’ version ‘0.1.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘visualpred’ can be installed ... [20s/54s] OK
See the install log for details.
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [5s/13s] OK
- checking whether the package can be loaded with stated dependencies ... [4s/11s] OK
- checking whether the package can be unloaded cleanly ... [4s/12s] OK
- checking whether the namespace can be loaded with stated dependencies ... [4s/12s] OK
- checking whether the namespace can be unloaded cleanly ... [5s/12s] OK
- checking loading without being on the library search path ... [5s/11s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [29s/59s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [9s/14s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [135s/150s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘Advanced.Rmd’ using knitr
** Processing: figure/unnamed-chunk-2-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 59332 bytes
Input file size = 59494 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49854
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49854
Output IDAT size = 49854 bytes (9478 bytes decrease)
Output file size = 49932 bytes (9562 bytes = 16.07% decrease)
** Processing: figure/unnamed-chunk-3-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 61007 bytes
Input file size = 61169 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50921
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50921
Output IDAT size = 50921 bytes (10086 bytes decrease)
Output file size = 50999 bytes (10170 bytes = 16.63% decrease)
** Processing: figure/unnamed-chunk-4-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 79378 bytes
Input file size = 79564 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69382
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69382
Output IDAT size = 69382 bytes (9996 bytes decrease)
Output file size = 69460 bytes (10104 bytes = 12.70% decrease)
** Processing: figure/unnamed-chunk-5-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 85902 bytes
Input file size = 86100 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 74308
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 74308
Output IDAT size = 74308 bytes (11594 bytes decrease)
Output file size = 74386 bytes (11714 bytes = 13.61% decrease)
** Processing: figure/unnamed-chunk-5-2.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 82133 bytes
Input file size = 82331 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79526
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79526
Output IDAT size = 79526 bytes (2607 bytes decrease)
Output file size = 79604 bytes (2727 bytes = 3.31% decrease)
** Processing: figure/unnamed-chunk-5-3.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 54778 bytes
Input file size = 54928 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48980
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48980
Output IDAT size = 48980 bytes (5798 bytes decrease)
Output file size = 49058 bytes (5870 bytes = 10.69% decrease)
** Processing: figure/unnamed-chunk-5-4.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 46664 bytes
Input file size = 46802 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44876
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44876
Output IDAT size = 44876 bytes (1788 bytes decrease)
Output file size = 44954 bytes (1848 bytes = 3.95% decrease)
--- finished re-building ‘Advanced.Rmd’
--- re-building ‘Basic_example.Rmd’ using knitr
** Processing: figure/unnamed-chunk-3-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 55831 bytes
Input file size = 55981 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46600
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46600
Output IDAT size = 46600 bytes (9231 bytes decrease)
Output file size = 46678 bytes (9303 bytes = 16.62% decrease)
** Processing: figure/unnamed-chunk-4-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 57771 bytes
Input file size = 57933 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48946
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48946
Output IDAT size = 48946 bytes (8825 bytes decrease)
Output file size = 49024 bytes (8909 bytes = 15.38% decrease)
** Processing: figure/unnamed-chunk-5-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 75565 bytes
Input file size = 75751 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62170
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62170
Output IDAT size = 62170 bytes (13395 bytes decrease)
Output file size = 62248 bytes (13503 bytes = 17.83% decrease)
** Processing: figure/unnamed-chunk-6-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 76647 bytes
Input file size = 76833 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63957
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63957
Output IDAT size = 63957 bytes (12690 bytes decrease)
Output file size = 64035 bytes (12798 bytes = 16.66% decrease)
** Processing: figure/unnamed-chunk-7-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 53035 bytes
Input file size = 53185 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45579
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45579
Output IDAT size = 45579 bytes (7456 bytes decrease)
Output file size = 45657 bytes (7528 bytes = 14.15% decrease)
** Processing: figure/unnamed-chunk-8-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 51673 bytes
Input file size = 51823 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43346
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43346
Output IDAT size = 43346 bytes (8327 bytes decrease)
Output file size = 43424 bytes (8399 bytes = 16.21% decrease)
** Processing: figure/unnamed-chunk-10-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 115358 bytes
Input file size = 115604 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 98875
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 98875
Output IDAT size = 98875 bytes (16483 bytes decrease)
Output file size = 98953 bytes (16651 bytes = 14.40% decrease)
** Processing: figure/unnamed-chunk-11-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 173498 bytes
Input file size = 173828 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 146958
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 146958
Output IDAT size = 146958 bytes (26540 bytes decrease)
Output file size = 147036 bytes (26792 bytes = 15.41% decrease)
** Processing: figure/unnamed-chunk-13-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 122193 bytes
Input file size = 122439 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103779
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103779
Output IDAT size = 103779 bytes (18414 bytes decrease)
Output file size = 103857 bytes (18582 bytes = 15.18% decrease)
** Processing: figure/unnamed-chunk-13-2.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 146262 bytes
Input file size = 146544 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 124621
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 124621
Output IDAT size = 124621 bytes (21641 bytes decrease)
Output file size = 124699 bytes (21845 bytes = 14.91% decrease)
--- finished re-building ‘Basic_example.Rmd’
--- re-building ‘Comparing.Rmd’ using knitr
Quitting from lines 34-58 [unnamed-chunk-2] (Comparing.Rmd)
Error: processing vignette 'Comparing.Rmd' failed with diagnostics:
Bernoulli requires the response to be numeric in {0,1}
--- failed re-building ‘Comparing.Rmd’
--- re-building ‘Outliers.Rmd’ using knitr
Warning: ggrepel: 1 unlabeled data points (too many overlaps). Consider increasing max.overlaps
** Processing: figure/unnamed-chunk-3-1.png
900x700 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 178117 bytes
Input file size = 178447 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 145684
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 145684
Output IDAT size = 145684 bytes (32433 bytes decrease)
Output file size = 145762 bytes (32685 bytes = 18.32% decrease)
Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps
** Processing: figure/unnamed-chunk-4-1.png
900x700 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 155970 bytes
Input file size = 156276 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 133779
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 133779
Output IDAT size = 133779 bytes (22191 bytes decrease)
Output file size = 133857 bytes (22419 bytes = 14.35% decrease)
** Processing: figure/unnamed-chunk-4-2.png
900x700 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 133279 bytes
Input file size = 133549 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 119430
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 119430
Output IDAT size = 119430 bytes (13849 bytes decrease)
Output file size = 119508 bytes (14041 bytes = 10.51% decrease)
** Processing: figure/unnamed-chunk-4-3.png
900x700 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 124683 bytes
Input file size = 124941 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 107168
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 107168
Output IDAT size = 107168 bytes (17515 bytes decrease)
Output file size = 107246 bytes (17695 bytes = 14.16% decrease)
--- finished re-building ‘Outliers.Rmd’
SUMMARY: processing the following file failed:
‘Comparing.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [9s/11s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR