* installing *source* package ‘trtswitch’ ... ** package ‘trtswitch’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (GCC) 14.2.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/trtswitch/src' g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c ipcw.cpp -o ipcw.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c ipe.cpp -o ipe.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c logistic_regression.cpp -o logistic_regression.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rpsftm.cpp -o rpsftm.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c splines.cpp -o splines.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c survival_analysis.cpp -o survival_analysis.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c tsegest.cpp -o tsegest.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c tsegestsim.cpp -o tsegestsim.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c tsesimp.cpp -o tsesimp.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c utilities.cpp -o utilities.o logistic_regression.cpp: In function 'double logisregplloop(int, Rcpp::NumericVector, void*, int, double, bool, int, int, double)': logistic_regression.cpp:456:3: warning: 'fail' may be used uninitialized [-Wmaybe-uninitialized] 456 | if (fail) { | ^~ logistic_regression.cpp:352:8: note: 'fail' was declared here 352 | bool fail; | ^~~~ survival_analysis.cpp: In function 'double phregplloop(int, Rcpp::NumericVector, void*, int, double, bool, int, int, double)': survival_analysis.cpp:4817:3: warning: 'fail' may be used uninitialized [-Wmaybe-uninitialized] 4817 | if (fail) { | ^~ survival_analysis.cpp:4715:8: note: 'fail' was declared here 4715 | bool fail; | ^~~~ survival_analysis.cpp: In function 'double liferegplloop(int, Rcpp::NumericVector, void*, int, double, int, int, double)': survival_analysis.cpp:3165:3: warning: 'fail' may be used uninitialized [-Wmaybe-uninitialized] 3165 | if (fail) { | ^~ survival_analysis.cpp:3053:8: note: 'fail' was declared here 3053 | bool fail; | ^~~~ survival_analysis.cpp: In function 'Rcpp::DataFrame rmest(Rcpp::DataFrame, const Rcpp::StringVector&, const Rcpp::StringVector&, std::string, std::string, double, double, bool)': survival_analysis.cpp:1213:27: warning: 'nevent' may be used uninitialized [-Wmaybe-uninitialized] 1213 | nevent0[index1] = nevent; survival_analysis.cpp:1179:24: note: 'nevent' was declared here 1179 | double t, nrisk, nevent, surv = 1.0; | ^~~~~~ g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o trtswitch.so RcppExports.o ipcw.o ipe.o logistic_regression.o rpsftm.o splines.o survival_analysis.o tsegest.o tsegestsim.o tsesimp.o utilities.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/trtswitch/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/trtswitch/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/trtswitch/src' installing to /data/gannet/ripley/R/packages/tests-devel/trtswitch.Rcheck/00LOCK-trtswitch/00new/trtswitch/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (trtswitch)