Install log for 'treenomial'

* installing *source* package ‘treenomial’ ...
** package ‘treenomial’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.2.0’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/treenomial/src'
g++-14 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppThread/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
In file included from /data/gannet/ripley/R/test-dev/RcppThread/include/RcppThread.h:9,
                 from RcppExports.cpp:5:
/data/gannet/ripley/R/test-dev/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: "R_NO_REMAP" redefined
   10 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppThread/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c allBinTreeShape.cpp -o allBinTreeShape.o
g++-14 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppThread/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c coeffMatrix.cpp -o coeffMatrix.o
In file included from /data/gannet/ripley/R/test-dev/RcppThread/include/RcppThread.h:9,
                 from coeffMatrix.cpp:3:
/data/gannet/ripley/R/test-dev/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: "R_NO_REMAP" redefined
   10 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppThread/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c distFunctions.cpp -o distFunctions.o
In file included from /data/gannet/ripley/R/test-dev/RcppThread/include/RcppThread.h:9,
                 from distFunctions.cpp:3:
/data/gannet/ripley/R/test-dev/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: "R_NO_REMAP" redefined
   10 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppThread/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c treeJuliaSet.cpp -o treeJuliaSet.o
g++-14 -std=gnu++11 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o treenomial.so RcppExports.o allBinTreeShape.o coeffMatrix.o distFunctions.o treeJuliaSet.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -latomic -lpthread
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/treenomial/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/treenomial/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/treenomial/src'
installing to /data/gannet/ripley/R/packages/tests-devel/treenomial.Rcheck/00LOCK-treenomial/00new/treenomial/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (treenomial)