* installing *source* package ‘tlrmvnmvt’ ...
** package ‘tlrmvnmvt’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++-14 accepts -g... yes
checking for C++ compiler vendor... gnu
checking whether C++ compiler accepts -O3 -fomit-frame-pointer... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using Fortran compiler: ‘GNU Fortran (GCC) 14.2.0’
using C++ compiler: ‘g++-14 (GCC) 14.2.0’
using C++14
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/tlrmvnmvt/src'
g++-14 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -O3 -fomit-frame-pointer -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -O3 -fomit-frame-pointer -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c aca.cpp -o aca.o
g++-14 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -O3 -fomit-frame-pointer -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c blk_reorder.cpp -o blk_reorder.o
g++-14 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -O3 -fomit-frame-pointer -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c cholesky.cpp -o cholesky.o
g++-14 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -O3 -fomit-frame-pointer -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c cov_kernel.cpp -o cov_kernel.o
g++-14 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -O3 -fomit-frame-pointer -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c covariance.cpp -o covariance.o
g++-14 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -O3 -fomit-frame-pointer -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c internal_r_func.cpp -o internal_r_func.o
g++-14 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -O3 -fomit-frame-pointer -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c inverse.cpp -o inverse.o
g++-14 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -O3 -fomit-frame-pointer -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c misc.cpp -o misc.o
g++-14 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -O3 -fomit-frame-pointer -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c morton.cpp -o morton.o
g++-14 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -O3 -fomit-frame-pointer -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c mvn.cpp -o mvn.o
g++-14 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -O3 -fomit-frame-pointer -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c mvnkernel.cpp -o mvnkernel.o
gfortran-14 -fpic -g -O2 -mtune=native -Wall -pedantic -c mvphi.f -o mvphi.o
mvnkernel.cpp: In function 'int mvndns(int, int, const Eigen::MatrixXd&, const Eigen::MatrixXd&, const Eigen::MatrixXd&, const Eigen::MatrixXd&, double*, double*, int, int*, double*, int, int*, int)':
mvnkernel.cpp:95:16: warning: unused variable 'alpha' [-Wunused-variable]
95 | double alpha, beta;
| ^~~~~
In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:76,
from /data/gannet/ripley/R/test-dev/RcppEigen/include/RcppEigenForward.h:26,
from /data/gannet/ripley/R/test-dev/RcppEigen/include/RcppEigen.h:25,
from mvnkernel.cpp:1:
/data/gannet/ripley/R/R-devel/include/Rmath.h:211:25: warning: unused variable 'Rf_beta' [-Wunused-variable]
211 | #define beta Rf_beta
| ^~~~~~~
mvnkernel.cpp:95:23: note: in expansion of macro 'beta'
95 | double alpha, beta;
| ^~~~
g++-14 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -O3 -fomit-frame-pointer -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c mvt.cpp -o mvt.o
g++-14 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -O3 -fomit-frame-pointer -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c qr.cpp -o qr.o
g++-14 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -O3 -fomit-frame-pointer -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c recur_blk_reorder.cpp -o recur_blk_reorder.o
g++-14 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -O3 -fomit-frame-pointer -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c svd.cpp -o svd.o
recur_blk_reorder.cpp: In function 'int recur_blk_reorder(std::vector<Eigen::Matrix<double, -1, -1> >&, std::vector<TLRNode>&, double*, double*, double*, double*, int*, double, double*, int, int*, int)':
recur_blk_reorder.cpp:36:13: warning: unused variable 'n' [-Wunused-variable]
36 | int n = nb * m;
| ^
g++-14 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -O3 -fomit-frame-pointer -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c tlr_tlr_add_qr.cpp -o tlr_tlr_add_qr.o
g++-14 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -O3 -fomit-frame-pointer -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c tlrmvn.cpp -o tlrmvn.o
g++-14 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -O3 -fomit-frame-pointer -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c tlrmvt.cpp -o tlrmvt.o
tlrmvn.cpp: In function 'int tlrmvn(int, const std::vector<Eigen::Matrix<double, -1, -1> >&, const std::vector<TLRNode>&, const Eigen::VectorXd&, const Eigen::VectorXd&, double&, double&, int, int&, double*, int, int*, int)':
tlrmvn.cpp:70:13: warning: unused variable 'sIncr' [-Wunused-variable]
70 | int sIncr = 1;
| ^~~~~
g++-14 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -O3 -fomit-frame-pointer -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c uncompress.cpp -o uncompress.o
g++-14 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -O3 -fomit-frame-pointer -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c uni_reorder.cpp -o uni_reorder.o
g++-14 -std=gnu++14 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o tlrmvnmvt.so RcppExports.o aca.o blk_reorder.o cholesky.o cov_kernel.o covariance.o internal_r_func.o inverse.o misc.o morton.o mvn.o mvnkernel.o mvphi.o mvt.o qr.o recur_blk_reorder.o svd.o tlr_tlr_add_qr.o tlrmvn.o tlrmvt.o uncompress.o uni_reorder.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/tlrmvnmvt/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/tlrmvnmvt/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/tlrmvnmvt/src'
installing to /data/gannet/ripley/R/packages/tests-devel/tlrmvnmvt.Rcheck/00LOCK-tlrmvnmvt/00new/tlrmvnmvt/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tlrmvnmvt)